Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0185 ATGGAGTCAAATCTTCAGCATCATCAGCATCAACAGCAGCAGATGAACTCCAGCTTGATGCGCTACAGATCTGCACCCAGCTCATACTTTTCCAATTTCATTGATGGAGAAGACTGTGAAGAGTTCCTACAACACAGGCCTTCAAGTCCTGAAACTGAGAGAATTTTCTCTAGCAGGCCTTCAAGTCCTGAAACTGAGAGAATTTTCTCTAGGTTCATGGCCAGTGGCGGGACAGAAGATTCATCGTCTCATACTGTTATGAATATGAGGCAGAATTCTCAGGCAATGGCGCCAGAATCAGTGGTAGTTGTGAGCCAGCAGAATCAGTTTATGGCGTCGATGAAGCACGGAGCGGAGGTTCTTCAGCAGCAGCAGAATGGTTATGCTTCTGGTTCGCAGATGATGTATCAGACTTCATCACCTATGCCACATCATAATTCAGCAGCTCCTGGTACAGTGGAGAATTCTTACAGTGCGGTTTCTTCAATGGGGATGGATCAGTCGCAGCAGATAAAGATTGGTGGAGGCAACAATTCGAATCTTATTCGACATAGTAGCTCACCTGCAGGACTGTTCTCCCACCTAAATGTTGAAAATGGCTATGCTATAATGAGAGGCATGGGAAATTTCGGGTCTGGAAGTGGGACTAATGGAGAACCATCTTTTTCTTCTGCAAGCAGATTGAAGGGTCAAATAAACTTCTCGTCAGGGCCACCTTCTTCCTCAGGCCTAGTGACTCCCATCTCTGAAATGGGGAACAAAAGCATGGGAACAGGTAGTCCAGACAATGGAAGTTTTGGTGAAGGTCATAGTAACAGTGGAGGTTTCATCACAGGCTTCCCAATAGGCTCTTGGGATGATTCTGCAATCATGTCTGAAAGTTTTAGTAGCTTGAAAAGTGTTAGAGATGATGAGGCAAAGACTTTTTCTGGTTTGAATGCATCTGAAGCTCAGAAGGGCGAGCCTGCAAACCGCCCTCCTGTTTTGGCTCATCACTTGAGTTTGCCAACAAAGACTTCTGCAGATTTGACGACCATTGAAAAGTATTTGCAGTTCCAAGATTCTGTACCTTGTAAGATTCGAGCCAAACGGGGATGTGCCACTCATCCACGAAGCATCGCTGAGAGGGTGAGAAGAACCCGAATCAGCGAAAGGATGAGGAAACTACAAGAGCTTGTCCCTAACATGGACAAGCAAACAAACACATCAGACATGTTAGATTTGGCTGTTGACTATATTAAAGACCTTCAGAAACAGGTCAAGACCCTCTCAGATAATCGGGCAAAGTGTACGTGTTCAAACAAGCAGAAGCCATAG 1317 0.4533 MESNLQHHQHQQQQMNSSLMRYRSAPSSYFSNFIDGEDCEEFLQHRPSSPETERIFSSRPSSPETERIFSRFMASGGTEDSSSHTVMNMRQNSQAMAPESVVVVSQQNQFMASMKHGAEVLQQQQNGYASGSQMMYQTSSPMPHHNSAAPGTVENSYSAVSSMGMDQSQQIKIGGGNNSNLIRHSSSPAGLFSHLNVENGYAIMRGMGNFGSGSGTNGEPSFSSASRLKGQINFSSGPPSSSGLVTPISEMGNKSMGTGSPDNGSFGEGHSNSGGFITGFPIGSWDDSAIMSESFSSLKSVRDDEAKTFSGLNASEAQKGEPANRPPVLAHHLSLPTKTSADLTTIEKYLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQKQVKTLSDNRAKCTCSNKQKP* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0185 438 SMART finulus 372 422 IPR011598 GO:0046983
Vvi6g0185 438 Pfam Helix-loop-helix DNA-binding domain 371 417 IPR011598 GO:0046983
Vvi6g0185 438 Gene3D - 367 437 IPR036638 GO:0046983
Vvi6g0185 438 MobiDBLite consensus disorder prediction 252 272 - -
Vvi6g0185 438 FunFam Transcription factor bHLH130 family 367 436 - -
Vvi6g0185 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 369 428 IPR036638 GO:0046983
Vvi6g0185 438 MobiDBLite consensus disorder prediction 50 65 - -
Vvi6g0185 438 CDD bHLH_AtbHLH_like 371 424 IPR045239 -
Vvi6g0185 438 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 435 - -
Vvi6g0185 438 MobiDBLite consensus disorder prediction 43 65 - -
Vvi6g0185 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 366 416 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0185 Vvi-Chr6 2129951 2132171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0185 5 434 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.284 8.47e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi6g0185 HLH 9.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0185 - - vvi:100253656 865.529