Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0174 ATGGCCTCCAACACCGCCGGCGATCTTGCCTACGACGTGCTTGAAACCCCAACCCTAGACTCCGAATCCCCGAACCTCCTCCTCCAAATCTCCGAGCAAGGCGGCTACGCTTACGTCAGCATGTCGGTGCTGGCCGCCGCAGGCGACCTCCGGGCGGCGGAGGCCACCCGCGAGATGGCGTGGGAGCAGCTCCACTCGGGGCCGTGGCACTCGGTCCTGCCGGTGTGGCGCGACGCCTACTCCATGGCCTGCCTCTACGTGGCGAAGCTACACCACCGCGCTGGCGATTTTGGGGAGGCGCTTAAGGTTTTGGACATGGGACTGATCATGGGAGGCACGCTTCTGCGCCAGGATTTGCACGCTGCGGTAGAGAAGGTAACGGCGAAAGCGAGTGAGCTTAGGGTTTCGGAGGAGGAGCAAGGAGAAGTGATTGTTGGAGGGGAAAACGCGTACCATGAAGCGGAGGTGCTTGGGGTTTTACCCATGAAGTCCTTGTCTTCTAAGATCATTGGGAAAAGGTCTGCACTTTCTTTGGAAGGATTCCTATGTGATTATTTCATGTCAGGTTCTCCTGTTATTATCAGTGACTGTATGGGTCATTGGCCAGCAAGGACCAGGTGGAATGACATGGATTATTTAAAAAGGGTTGCTGGTGACCGCACAGTTCCAGTTGAGGTTGGGAAAAACTACCTATCCTCAGATTGGAAGCAAGAGCTTATTACATTTTCCCAGTTTTTGGAGAGGATTCAGTCCAGTGACTGTACTTCTACACTCCCTACATATCTTGCTCAACATCCTTTGTTTGACCAGATACATGAGCTAAGGAAGGACATTTTCATTCCTGACTACTGTTATGCTGGTGGAGGGGAGCTCAGGTCTCTTAATGCTTGGTTTGGTCCAGCTGGGACTGTGACACCATTACACCATGATCCACACCATAATATACTTGCTCAGGTTGTTGGCAAAAAGTATATCAGGCTTTACCCTGCTTCATTGTCGGAGGAACTTTACCCATACACTGAAACCATGCTTTGCAATTCCAGCAAGGTTGATCTGGACAACATAGACGAGAAAGAGTTTCCAAAGGTGAAGGACCTGGAATTTCAAGACTGCATTTTGGAGGAAGGCGAAATGCTTTACATCCCACCAAAGTGGTGGCACTACGTGCGATCTCTCACAACTAGTTTTTCCGTTAGCTTCTGGTGGAGCAATTGTGGAGGTTCACCTGCATCCTGA 1236 0.5129 MASNTAGDLAYDVLETPTLDSESPNLLLQISEQGGYAYVSMSVLAAAGDLRAAEATREMAWEQLHSGPWHSVLPVWRDAYSMACLYVAKLHHRAGDFGEALKVLDMGLIMGGTLLRQDLHAAVEKVTAKASELRVSEEEQGEVIVGGENAYHEAEVLGVLPMKSLSSKIIGKRSALSLEGFLCDYFMSGSPVIISDCMGHWPARTRWNDMDYLKRVAGDRTVPVEVGKNYLSSDWKQELITFSQFLERIQSSDCTSTLPTYLAQHPLFDQIHELRKDIFIPDYCYAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYTETMLCNSSKVDLDNIDEKEFPKVKDLEFQDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSNCGGSPAS* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0174 411 SUPERFAMILY Clavaminate synthase-like 173 403 - -
Vvi6g0174 411 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 81 403 - -
Vvi6g0174 411 SMART cupin_9 260 411 IPR003347 -
Vvi6g0174 411 ProSiteProfiles JmjC domain profile. 254 411 IPR003347 -
Vvi6g0174 411 Gene3D Cupin 169 403 - -
Vvi6g0174 411 FunFam lysine-specific demethylase JMJ30 169 402 - -
Vvi6g0174 411 Pfam Cupin-like domain 183 404 IPR041667 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0174 164 402 Acyl Lipid Metabolism Gene Families AT3G45880 25.000 2.10e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi6g0174 Cupin_8 6.1e-50 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0174 K24444 - vvi:100267241 839.721