Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0150 ATGCTCGACACTGGAAACTTTGTGCTGGCGAGCCAAGAATCCAGCAATCTGTGGGAGAGTTTCAGTCATCCAACAGACACGATCTTACCAACCCAGATACTGAATCTAGGCAGCCAACTTGTTGCTCGTTTCTTGGAGACGAATTACTCAAATGGAAGATTCATGTTTGCGTTACAAAGCGATGGGAATCTAGTGCTTTACACCACTGATTTCCCAATGGATTCTAACAATTTTGCTTATTGGTCTACTCAGACAATGGACAGTGGATTTCAAGTGAATATGAGAGAGGATTTCTACCAGAGGGCAATTCTTGAATATGATGGGGTTTTCAGGCAATATGTCTACCCAAAATCTGCAGCCTCAGGGACTATGGCCTGGTCCTCCTTGTCCAAATTCATACCTGAAAATATCTGCACGAGAATTGGAGCGAGTACCGGCGGTGGAGCTTGCGGGTTCAACAGCTACTGCAGACTGGGAGACAATCAGAGACCCAGTTGCCACTGCCCTCCTGGTTACACCTGGTTGGATCCACTTGATTCTTTGGGTGGATGCAGACAGAACTTTGTACAGCAGAGATGTGATGCAGGAACACAAGAAGCGGGCCTGTTTTATTTTTCAGAGATGCTGGGTGTGGATTGGCCGTATGCCGACTACCAACATTTTAAAGGTGTAACTCAGGATTGGTGCAGGCAAGCCTGTTTGGGTGACTGTTTCTGTGCTGTGGCCATTTTCAGAGATGGGGACTGCTGGATGAAGAAAGTCCCTCTCTCAAATGGGAGGTATGATCTTAGCAATGAAAGAAGAGCTATGATTAAAGTGAGGAAGGATAATTCTACCTTGCCACCCATAGATGAAGGTTCGAAGGGGAAGGATCAGTCAACTTTGATCCTCACTGGATCGGTGCTGCTCAGTAGCTCAGCGTTCTTTAACTTTCTCTTCCTCCTAGCAATTGTTCTGTTCATCCGCCGCTGCAAGCACAGAAAAACAAGTGTTCTTCAGACATCCCCAGCCATGGAGGGAACAAATCTCCGGAGCTTCACTTACGAAGAGCTAGAAGAAGCCACCAATGGATTCAGAGATGAACTGGGGAGCGGGGCTTTTGCAACAGTTTACAAAGGGGCTCTACCCCATGATGATGGAATCAATTTGATTGCAGTGAAAAAGCTGGAGAGGATGGAGAAAGAAGGAGACAAGGAATTTGGGGCAGAAGTGAAAGCAATTGGCCGGACAAATCACAAGAACCTAGTCCAACTCCTGGGGTACTGCAACGAGGGGCAACACCGGCTTCTAGTATACGAGTTCATGAGCAATGGTTCTTTGGCAACCTTCCTATTTGGAAATTCAAGGCCAGATTGGTGTAAAAGAACACGGATCATCCTAGGAACTGCAAGAGGGCTCTTGTACTTGCATGAGGAGTGCAGCACCCAGATCATACACTGTGACATCAAGCCTCAAAACATACTTTTAGATGACTTTTTAACAGCAAGGATTTCAGATTTTGGGCTAGCCAAGCTTTTGAAGACGGATCAGACGCGAACCATGACTGGAATCAGGGGAACCAAAGGGTATGTTGCGCCTGAATGGTTCAAGACAGTGCCTGTTACAGCCAAGGTTGATGTTTACAGCTTTGGGATTGTGTTGCTAGAGATCATTTTCTGCAGGAAGAACTTCGAACCCGATGTAAGGGATGAAAGTCAGATGATCCTGGCTGATTGGGTGCAAGACTGCTACAAAGAGAAGAGATTGGATTTGCTGGTAGGAAATGATGAAGAGGTATTTGGTGATATGGAGAAACTGGAGAAGTTTGTGATGATAGCAATATGGTGTACGCAGGAGGATCCATCTCGAAGACCCACCATGAAGAAAGTTGTGAAGAACTTCGCACCCGATGTAAGGGATGAAAGTCAGATGATCCTGGCTGATTGGGTGCAAGACTGCTACAAAGAGAAGAGATTGGATTTGCTGGTAGGAAATGATGAAGAGGCATTTGGTGATATGGAGAAACTGGAGAAGTTTGTGATGATAGCAATATGGTGTACTCAGGAGGATCCATCTCGAAGACCCACCATGAAGAAAGTTGTGCAAATGCTAGAAGGAGCTGCTGAAGTTTCTATTCCTCCAGACTCATCTTTCTCATCTGCCAGTATGAAAAAGGGATCCAAAGTTCAACTTACTAGTGATGGAAATTTTGTGCTGAATGATCAGGAAGGTGAAAAGATATGGCCGGTTGATTCTACGATTACTGGTGTGGCCTATGCAGCCATGCTCGACAGTGGAAACTTCGTGCTGGTAAGGCAGGATTCCATTAATTTGTGGGAGAGTTTTGATAATCCAACAGATACGATATTGCCCACACAGGCACTGAATCAAGGCAGCAAGCTTACGGATCAGACTCAGACTACGACTGGAATCAGGGGAACCAAGGGGTATGTTGCCCCTGAATGGTTCAAGACAGTGCCAGTTACCGCCAAGGTTGATGTTTACAGCTTTGGAATTGTGCTGCTAGAGCTCATTTTCTGCCGGAAGAACTTTGAACCAGCAGTGGAGGATGAAAATCAGATGGTATTAGCTGATTGGGCATATGACTCCTACCTAGAAAGGAAACTGGATCTATTAGTGGAAAAAGATCAGGAGGCACTGGATAACATGGAAAAGCTGGAGAAGTTTGTGATGATAGCAATATGGTGCATTCAGGAGGATCCATCTCAAAGACCAACCATGAAGAAAGTCACACAGATGCTAGAAGGAGCCATCGAAGTTCCTCTTCCTCCAGACCCATCCCCATTCTCCAAATCATTTCCGCATCAACCATAA 2814 0.457 MLDTGNFVLASQESSNLWESFSHPTDTILPTQILNLGSQLVARFLETNYSNGRFMFALQSDGNLVLYTTDFPMDSNNFAYWSTQTMDSGFQVNMREDFYQRAILEYDGVFRQYVYPKSAASGTMAWSSLSKFIPENICTRIGASTGGGACGFNSYCRLGDNQRPSCHCPPGYTWLDPLDSLGGCRQNFVQQRCDAGTQEAGLFYFSEMLGVDWPYADYQHFKGVTQDWCRQACLGDCFCAVAIFRDGDCWMKKVPLSNGRYDLSNERRAMIKVRKDNSTLPPIDEGSKGKDQSTLILTGSVLLSSSAFFNFLFLLAIVLFIRRCKHRKTSVLQTSPAMEGTNLRSFTYEELEEATNGFRDELGSGAFATVYKGALPHDDGINLIAVKKLERMEKEGDKEFGAEVKAIGRTNHKNLVQLLGYCNEGQHRLLVYEFMSNGSLATFLFGNSRPDWCKRTRIILGTARGLLYLHEECSTQIIHCDIKPQNILLDDFLTARISDFGLAKLLKTDQTRTMTGIRGTKGYVAPEWFKTVPVTAKVDVYSFGIVLLEIIFCRKNFEPDVRDESQMILADWVQDCYKEKRLDLLVGNDEEVFGDMEKLEKFVMIAIWCTQEDPSRRPTMKKVVKNFAPDVRDESQMILADWVQDCYKEKRLDLLVGNDEEAFGDMEKLEKFVMIAIWCTQEDPSRRPTMKKVVQMLEGAAEVSIPPDSSFSSASMKKGSKVQLTSDGNFVLNDQEGEKIWPVDSTITGVAYAAMLDSGNFVLVRQDSINLWESFDNPTDTILPTQALNQGSKLTDQTQTTTGIRGTKGYVAPEWFKTVPVTAKVDVYSFGIVLLELIFCRKNFEPAVEDENQMVLADWAYDSYLERKLDLLVEKDQEALDNMEKLEKFVMIAIWCIQEDPSQRPTMKKVTQMLEGAIEVPLPPDPSPFSKSFPHQP* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0150 937 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 86 IPR036426 -
Vvi6g0150 937 FunFam Uncharacterized protein 21 115 - -
Vvi6g0150 937 Gene3D Phosphorylase Kinase; domain 1 320 434 - -
Vvi6g0150 937 Gene3D - 13 128 IPR036426 -
Vvi6g0150 937 Pfam Protein kinase domain 360 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0150 937 Pfam Protein kinase domain 793 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0150 937 SUPERFAMILY Protein kinase-like (PK-like) 793 932 IPR011009 -
Vvi6g0150 937 Pfam D-mannose binding lectin 719 793 IPR001480 -
Vvi6g0150 937 Gene3D Transferase(Phosphotransferase) domain 1 783 925 - -
Vvi6g0150 937 Gene3D Transferase(Phosphotransferase) domain 1 629 711 - -
Vvi6g0150 937 CDD PAN_AP_plant 189 273 - -
Vvi6g0150 937 SUPERFAMILY alpha-D-mannose-specific plant lectins 718 794 IPR036426 -
Vvi6g0150 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Vvi6g0150 937 SUPERFAMILY Protein kinase-like (PK-like) 340 625 IPR011009 -
Vvi6g0150 937 Gene3D - 712 774 IPR036426 -
Vvi6g0150 937 Gene3D Transferase(Phosphotransferase) domain 1 435 628 - -
Vvi6g0150 937 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 625 708 - -
Vvi6g0150 937 ProSiteProfiles Protein kinase domain profile. 356 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0150 937 FunFam S-receptor-like serine/threonine-protein kinase 325 434 - -
Vvi6g0150 937 ProSitePatterns Protein kinases ATP-binding region signature. 362 388 IPR017441 GO:0005524
Vvi6g0150 937 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 435 633 - -
Vvi6g0150 937 CDD STKc_IRAK 362 625 - -
Vvi6g0150 937 SMART serkin_6 356 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0150 Vvi-Chr6 1654917 1670187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0150 792 916 Receptor kinase-like Gene Family AT1G60800 40.625 5.12e-21 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi6g0150 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0150 - - vvi:100250062 1251.88