Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0149 ATGGCACCTACACTGCCTTGTAATCACCCTCTCTGCTATTTGCTTCTGCTTCTGCTTCTTCTGCTGAAACCTGTTTCAAGCTATGCTCAAACTTCTGGGAAGTTTAGCTTGGGCTCTTCCCTTACTGCTCAGAAGAACGATTCCTTTTGGGCATCCCCATCTGGTGATTTCGCTTTTGGGTTCCAACAGATTGGAAATGGAGGTTTCCTACTAGCTATTTGGTTCAACAAAGTACCTGAAAAGACCATAATTTGGTCAGCCAACAGCGATAATCCAAAGCCAAGAGGATCCAAAGTTGAACTCACCACTGATGGAGAGTTCATTCTCAATGACCAGAAAGGCAAGCAGATGTGGAAGGCTGATCTGATCGGTCCTGGAGTCGCGTATGCAGCCATGCTTGACACTGGAAACTTTGTGCTTGCAAGCCAGAATTCCACCTATTTGTGGGAGAGTTTCAATCATCCAACAGACACTATATTGCCCACCCAGATACTGGAGCAAGGCAGCAAGCTTGTTGCTCGTTACTCAGAAACGAATTACTCAAGGGGAAGATTCATGTTTTCGCTGCAGACTGATGGGAATCTAGTGCTTTACACCACTGATTTCCCAATGGATTCTGCAAATTTTGCTTACTGGGAAAGTGACACTGTAGGCAGTGGCTTTCTGGTGATATTCAACCAGTCGGGTAACATCTACCTTATAGGGAGGAATGGAAGCATACTCAATGAAGTGCTGCCAAATAAGGCTTCAACTCCAGACTTCTACCAGAGAGGGATTCTTGAATATGATGGGGTTTTCAGGCAATATGTCTACCCAAAAACTGCCGGCTCAAGGGCTGGTGGGTGGTCCAGTTTGTCTTCTTTCATACCTGAAAACATCTGCACAGCAATTACAGCAGGGACAGGCAGTGGAGCTTGCGGGTTCAACAGCTACTGTACTCTGGGAGATGATCAGAGGCCTTATTGCCAATGCCCACCTGGTTACACCTTCTTGGATCCGCATGATCAAGTGAAGGGGTGCAGACAGAACTTTTTTCCAGAAATTTGCAGTGAAGGATCACATGAAACAGGTGAGTTTGATTTTGTGAGGATGACAAACGTGGATTGGCCATTGTCAGATTATGACCGATTTCAGCTATTTACTGAGGATGAGTGCAGAAAAGCTTGCTTGGATGATTGCTTTTGTGCTGTTGCCATTGTTAGAGAGGGGGATTGTTGGAAGAAGAAATTCCCTCTGTCAAATGGGAGGTTTGATTCTAGTAACGGGCGAATAGCACTGATTAAAGTAAGAAAGGATAATTCTACTTTCCCACTTGGAAGTGAAGGTAAAGATCAGGCTACTCTAATCCTCACTGGATCAGTGCTGCTAGGTAGCTCAGTGCTTCTCAACATTCTTCTCCTCCTAGCAACTGCCATGTTCATCTACCGCTTGAATCAGAGAAAGCCGATGATTGATGAATCACGCCTGGTCATGCTGGGAACAAATCTAAAACGATTCGCTTATGATGAGCTAGAAGAGGCCACTGATGGATTCAAGGATGAACTGGGAACTGGGGCTTTTGCAACAGTTTACAAAGGTACTCTAGCCCATGATAATGGAAATCTTGTTGCAGTCAAGAAGCTGGACAGAGCAGTGGGAGAAGGAGACAAGCAGGAATTTGAAAAAATAGTGGGTGCAATTGGCCGGACAATTCACAAAAATCTAGTCCAACTTCTGGGATTCTGCAATAAGGGGCAACACCGGCTTCTTGTGTATGAGTTCATGAGCAATGGCTCTTTAGCAACCTTCCTATTTGGCAATTCAAGACCAAGTTGGTATAAAAGAATGGAGATTATCCTAGGAACTGCAAGAGGGCTCTTGTACTTGCATGAAGAGTGCAGCATCCAGGCTATTCACGGTGATATTAATCCTCAGAATATACTCCTTGATGACTCTTTAACAGCAAGGATTTCTGATTTTGGATTAGCTAAGCTTCTGAAGATGGATCAGACTGGAACTACGACTGGAGTGATGGGGACCAAAGGGTATGCTGCCCCTGAGTGGTTCAAGAAGGTGCCTATTACATTCAAGGTTGATGTCTACAGCTTTGGAATTGTGCTGCTAGAGCTAATCTTCTGCAGGAAGAATTTCGAGCCAGAGGTGGAGGATGAAAAGCAGATGGTATTGGGAGAATGGGCATATGATTGCTACAAAGAAGGGAAATTAGATCTATTAGTGGGAAATGATCAGGAGGCATTGGATGACATAAAGAGGCTGGAGAAGTTTGTCATGGTAGCATTCTGGTGCACTCAGGAGGATCCATCTCAGAGACCGACAATGAAGACAGTCATGAAGATGCTGGAAGGTGCCACTGAAGTTCCTGTCCTCCAGACCCACCCTCATTGA 2385 0.4503 MAPTLPCNHPLCYLLLLLLLLLKPVSSYAQTSGKFSLGSSLTAQKNDSFWASPSGDFAFGFQQIGNGGFLLAIWFNKVPEKTIIWSANSDNPKPRGSKVELTTDGEFILNDQKGKQMWKADLIGPGVAYAAMLDTGNFVLASQNSTYLWESFNHPTDTILPTQILEQGSKLVARYSETNYSRGRFMFSLQTDGNLVLYTTDFPMDSANFAYWESDTVGSGFLVIFNQSGNIYLIGRNGSILNEVLPNKASTPDFYQRGILEYDGVFRQYVYPKTAGSRAGGWSSLSSFIPENICTAITAGTGSGACGFNSYCTLGDDQRPYCQCPPGYTFLDPHDQVKGCRQNFFPEICSEGSHETGEFDFVRMTNVDWPLSDYDRFQLFTEDECRKACLDDCFCAVAIVREGDCWKKKFPLSNGRFDSSNGRIALIKVRKDNSTFPLGSEGKDQATLILTGSVLLGSSVLLNILLLLATAMFIYRLNQRKPMIDESRLVMLGTNLKRFAYDELEEATDGFKDELGTGAFATVYKGTLAHDNGNLVAVKKLDRAVGEGDKQEFEKIVGAIGRTIHKNLVQLLGFCNKGQHRLLVYEFMSNGSLATFLFGNSRPSWYKRMEIILGTARGLLYLHEECSIQAIHGDINPQNILLDDSLTARISDFGLAKLLKMDQTGTTTGVMGTKGYAAPEWFKKVPITFKVDVYSFGIVLLELIFCRKNFEPEVEDEKQMVLGEWAYDCYKEGKLDLLVGNDQEALDDIKRLEKFVMVAFWCTQEDPSQRPTMKTVMKMLEGATEVPVLQTHPH* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0149 794 CDD B_lectin 50 155 IPR001480 -
Vvi6g0149 794 Pfam D-mannose binding lectin 82 165 IPR001480 -
Vvi6g0149 794 SUPERFAMILY Protein kinase-like (PK-like) 485 781 IPR011009 -
Vvi6g0149 794 Gene3D Phosphorylase Kinase; domain 1 483 587 - -
Vvi6g0149 794 ProSiteProfiles Bulb-type lectin domain profile. 34 153 IPR001480 -
Vvi6g0149 794 PIRSF SRK 5 793 IPR024171 GO:0004674
Vvi6g0149 794 CDD PAN_AP_plant 353 429 - -
Vvi6g0149 794 Gene3D - 34 154 IPR036426 -
Vvi6g0149 794 SMART blect_4 40 155 IPR001480 -
Vvi6g0149 794 FunFam S-receptor-like serine/threonine-protein kinase 478 587 - -
Vvi6g0149 794 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 216 IPR036426 -
Vvi6g0149 794 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 788 - -
Vvi6g0149 794 ProSiteProfiles Protein kinase domain profile. 509 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0149 794 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 29 153 - -
Vvi6g0149 794 ProSitePatterns Protein kinases ATP-binding region signature. 515 540 IPR017441 GO:0005524
Vvi6g0149 794 Gene3D - 156 275 IPR036426 -
Vvi6g0149 794 FunFam Serine/threonine-protein kinase 156 297 - -
Vvi6g0149 794 Pfam Protein kinase domain 512 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0149 794 Gene3D Transferase(Phosphotransferase) domain 1 588 792 - -
Vvi6g0149 794 FunFam Uncharacterized protein 155 279 - -
Vvi6g0149 794 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 41 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0149 Vvi-Chr6 1648514 1650898 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0149 440 793 Receptor kinase-like Gene Family AT1G56120 39.385 2.53e-68 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi6g0149 Pkinase 2.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0149 - - vvi:100244923 1547.33