Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0148 ATGGGAATTGAAACCATTGGGTGGGAGTACAATCATGTTATTAAAGCATGGAATATCATTAGTCATGTATCCCAAGATTGTGACAAGGATTGGAGATGGGTCATATCAGGTCAGATTCGCCATTGTCTTCTGCCTCTGCTGCTGCTGCTTCTGCTTCTGCTTCTGCTACTGCTGCTGTTAGTTTCAAGTGATGCTCAAATTTCTCGTAACTTTACTTCGGGCTCATCCCTCATTGCGAGAGACAACAATTCCTTTTTGGCGTCCCCGAATGGTGATTTCGCTTTTGGATTCCAACAGGTTGGAAGTGGAGGCTTCTTGCTAGCTATTTGGTTCAACAAAGTACCTGAAAGGACCGTAGTTTGGTCAGCCAACGGCGATAGTCTGGTGCAAACTGGATCCAGAGTTCAACTTACCACTGATGGAGAATTCATGCTCAATGACCCTAAAGGTAAACAGATGTGGAAGGCTGATCTGAACAGTACTGGAGTTGCCTATGCAGCCATGCTGGACACTGGAAACTTTGTGCTTGCAGGCCACAATTCCACCTATCTGTGGCAGAGCTTCAATCATCCAACAGACACAATATTACCCACCCAGATACTGAATCAAGACAGCAAACTTGTTGCTCGTTTCTCGGAGGTGAATTACTCAAGTGGAAGATTCATGCTTATATTGCAAACTGACGGGAATCTTGTGCTTTACACCATTGATTTCCCAATGGATTCTAATAATTATGCATATTGGGCAACTGCCACTGTACTCAGCGGGTTTCAGGTGATCTACAATGAGTCTGGTGACATATACCTCATAGGGAACAACAGGATAAAACTCAGTGATGTACTGTCAAATAAAAAACCAACAGGAGAATTCTATCAGAGAGCAATTCTTGAATATGATGGAGTTTTCAGACAGTATGTCCACCCGAAGTCTGCTGGCTCAGGTGCTCCTATGGCCTGGTCCCCTTTATCCGCATTCATACCTGAAAATATCTGCACAAATATTACCGCAAGTACAGGCAGTGGAGCTTGCGGGTTCAACAGCTACTGCACACTAGGAGATCATCAGAGACCTATTTGCAAGTGCCCTCCTGGTTACACCTTTTTGGATCCACACAATGAAGTGAAGGGATGCAGACAGGACTTTTATCCAGAGATTTGTGATGAAGGATCTCATGAAACAGGTAGGTTTGATTTTGAAAGGATGACAAACGTGGATTGGCCAACGTCAGATTATGACCGATTTCAACTATTTACTGAGGATGATTGCAGAAAAGCTTGCTTGGAAGATTGTTTTTGTGCGGTTGCAATTTTCAGAGATGGGGATTGTTGGAAGAAGAAAATCCCTCTTTCAAATGGGAGGTTTGAGTCTACTAATGACCGAATAGCTCTCATTAAAGTAGAGAAGAAGAATTCTTCTTTCCCACATGGAGGTGAAGGTTTTAAGGACAAGCATGAGTCCATTCTGATCCTTGCTGGATCAGTGCTGCTAGGCAGCTCGGTGCTTCTGAATGTTCTTCTCCTCCTAGCAACTGCTACATTCATCCTCCGCTTGTATTGCAGAAAACCAGCAATCATTGAATCACAACAAGTCATGGTGGGAAGAAACCTACAAAGTTTCACTTACCATGAGCTGGAGGAGGCCACCAATGGATTCAAGGATGAACTAGGAAAGGGGGCTTTTGGAACAGTCTACAAAGGGAGCTGCAATGGAAATCTGGTTGCAGTAAAAAAGTTAGAAAGGATGGTGAAAGAAGGAGAGCGGGAATTTGAAACAGAAGTGAGTGCGATTGTCAGGACAAATCACAAGAATCTAGTCCAACTTCTGGGGTTCTGCAATGAGGGGCTACACCGGCTTCTAGTATACGAGTTCATGAGCAATGGCTCCTTAGCAACCTTCCTATTTGGAAGTTCAAGACCTAAATGGCACCAAAGAATACAGATTATCCTAGGAACTGCAAAAGGCCTTCTGTACTTACATGAAGAGTGCAGCATCCAGACCATACATTGTGACATCAAGCCTCAAAACATTCTCCTGGATGACTCCTTAACAGCAAGGATATCAGACTTTGGATTGGCTAAGTTTCTGAAAACAGATCAGACGCGAACCATGACTGGAATCAGGGGAACCAAAGGCTATGTTGCCCCTGAGTGGTTCAAGACAGTGCCCATTACCGTCAAGGTTGATGTTTACAGCTTTGGAATTGTGTTGCTTGAGCTCATATTCTGCAGGAAGAATTTTGAAGTGGAGGCTGAGGACAAAAGTCCGGTCGTATTGGCTGAATTGGCATACTATTGCTACAAAGAAGGGAAACTGGATATGCTACTGGACAATGATGAAGAGGCACTGGAAGACATGGAGAGGCTGGAGAAGTTTGTGATGATAGCATTTTGGTGCATTCAGGATGATCCACATCAAAGGCCTGGAATGAAGAAAGTCACTCAGATGCTTGAAGGAGCCATTGAAGTTTCTTCTCCTCCAGACTCATCCTCATTTACCCTTTCATGTCTCCCACCAGTTGCAGCTTGGGGGATTCTGCAGTTTCAGTTCAATCTATGTAATTCAAAGTTATCAGTTAGCTTTCCCAGCATGGCAACTTCATTGCCTAGTCATTCTCTATGGTATTCACTTCTGCTTCAGCTGCTGCTGCTGCTGCCTGTTCTGAGTGTTGCTAAAACTCCTGTGAAGTTTACTTTGGGCTCATCCCTCACTGCCATAGACAACAGTTCGTATTTGGCATCACCATCGGGTGAATTCGCTTTTGGATTCCAACAGATTGGAAGTGGAAGGTTCTTGCTTGCTATTTGGTTCAACAAAATACCTGAAAAGACCATAATTTGGTCAGCCAATGGCAATAATCTAGTGCAGAGAGGATCCAAGATTCGCCTTACCAGTGATGGTGAGTTCATGCTGAATGACCCAACAGGCAAACAGATATGGAAAGCTGATCCAGTCAGTCCTGGAGTCTCCCATGCGGCCATGCTCGACACTGGAAACTTTGTGCTGGCAAGCCAAGATTCCACCCTTCTGTGGGAGAGTTTCAATCATCCAACAGACACAATATTACCTACCCAGATCCTGAATCAAGGCGGCAAACTTGTTGCTCGGATTTCGGATATGAGTTATTCAAGTGGGAGATTCCTGTTTACATTACAAGATGATGGAAATCTTGTGCTTTCCCACAGGGATTTCAGAAAGGGTTCTACTAGTACTGCTTATTGGTCTAGCCAGACAGAAGGTGGAGGCTTTCAGGTTATCTTCAACCAGTCTGGCCATGTCTACCTTTCAGGGAGAAACAGCAGCATACTCAATGGGGTGTTTTCCACTGCAGCTTCCACAAAAGACTTCCACCAGAGAGCAATTCTTGAACATGATGGAGTCTTCAGGCAATATGTCTACCCAAAAAAAAATCTAGTCCAGCTCCTGGGGTTCTGCAATGAGGGACAACACCAGCTTCTTGTATACGAGTTTATGAGTAATGGTTCTCTATCAGCCTTCCTATTTGGAAAATCAAGGCCAAGTTGGTACCACAGGATACAGATTATCCTTGGGACTGCAAGAGGGCTCTTGTACTTACATGAAGAGTGCAGCACCCAGATCATACACTGTGACATTAAACCTCAAAATATACTCCTAGACGACGGTTTCACAGCAAGGATCTCCAACTTTGGATTAGCAAAGCTTCTGAAGTCTGATCAGACTCGAACGATGACTGGAATCAGGGGAACCAGAGGGTACCTTGCCCCTGAGTGGTTCAAGACAGTGCCTATTACTGTCAAGGTTGATGTTTACAGCTTTGGAATTCTGCTGCTGGAGCTCATTTTCTGTAGGAAGAATTTTGAGCTAGAGCTGGAGGATGAAGATCAGGTGGTATTGGCTGATTGGGCATATGATTGCTACAAAGAAGGGAAACTGGATCAGATACTGGAAAATGATAAGGAGGCATTGAATGACATAGAGACAGTGAGGAAGTTTTTGATGATTGCATTCTGGTGCATTCAGGAGGATCCATCTAAAAGGCCTACCATGAAGACAGTCACTCAGATGCTTGAAGCCTTGATGGTAGCCAAGCACAAGCCTACTATCATCAGTGAACTCTACTTTAGATCCCCTGTTCAGCAGGCTGATTTCCATCTGCATATTGGACTATGGTCTTCTGGGGTATCATGTTTTATCATCTTGAAGGTAAGATCAGATCCTCTTTGTCCAGTTGGTGAAATCACCAGGAGGAAAACAGCTAAACATGAGAGCAGAAGAAACAACATGAGAAGAGCAAGAGAAGTGAATTTGTTCTGA 4293 0.4416 MGIETIGWEYNHVIKAWNIISHVSQDCDKDWRWVISGQIRHCLLPLLLLLLLLLLLLLLLVSSDAQISRNFTSGSSLIARDNNSFLASPNGDFAFGFQQVGSGGFLLAIWFNKVPERTVVWSANGDSLVQTGSRVQLTTDGEFMLNDPKGKQMWKADLNSTGVAYAAMLDTGNFVLAGHNSTYLWQSFNHPTDTILPTQILNQDSKLVARFSEVNYSSGRFMLILQTDGNLVLYTIDFPMDSNNYAYWATATVLSGFQVIYNESGDIYLIGNNRIKLSDVLSNKKPTGEFYQRAILEYDGVFRQYVHPKSAGSGAPMAWSPLSAFIPENICTNITASTGSGACGFNSYCTLGDHQRPICKCPPGYTFLDPHNEVKGCRQDFYPEICDEGSHETGRFDFERMTNVDWPTSDYDRFQLFTEDDCRKACLEDCFCAVAIFRDGDCWKKKIPLSNGRFESTNDRIALIKVEKKNSSFPHGGEGFKDKHESILILAGSVLLGSSVLLNVLLLLATATFILRLYCRKPAIIESQQVMVGRNLQSFTYHELEEATNGFKDELGKGAFGTVYKGSCNGNLVAVKKLERMVKEGEREFETEVSAIVRTNHKNLVQLLGFCNEGLHRLLVYEFMSNGSLATFLFGSSRPKWHQRIQIILGTAKGLLYLHEECSIQTIHCDIKPQNILLDDSLTARISDFGLAKFLKTDQTRTMTGIRGTKGYVAPEWFKTVPITVKVDVYSFGIVLLELIFCRKNFEVEAEDKSPVVLAELAYYCYKEGKLDMLLDNDEEALEDMERLEKFVMIAFWCIQDDPHQRPGMKKVTQMLEGAIEVSSPPDSSSFTLSCLPPVAAWGILQFQFNLCNSKLSVSFPSMATSLPSHSLWYSLLLQLLLLLPVLSVAKTPVKFTLGSSLTAIDNSSYLASPSGEFAFGFQQIGSGRFLLAIWFNKIPEKTIIWSANGNNLVQRGSKIRLTSDGEFMLNDPTGKQIWKADPVSPGVSHAAMLDTGNFVLASQDSTLLWESFNHPTDTILPTQILNQGGKLVARISDMSYSSGRFLFTLQDDGNLVLSHRDFRKGSTSTAYWSSQTEGGGFQVIFNQSGHVYLSGRNSSILNGVFSTAASTKDFHQRAILEHDGVFRQYVYPKKNLVQLLGFCNEGQHQLLVYEFMSNGSLSAFLFGKSRPSWYHRIQIILGTARGLLYLHEECSTQIIHCDIKPQNILLDDGFTARISNFGLAKLLKSDQTRTMTGIRGTRGYLAPEWFKTVPITVKVDVYSFGILLLELIFCRKNFELELEDEDQVVLADWAYDCYKEGKLDQILENDKEALNDIETVRKFLMIAFWCIQEDPSKRPTMKTVTQMLEALMVAKHKPTIISELYFRSPVQQADFHLHIGLWSSGVSCFIILKVRSDPLCPVGEITRRKTAKHESRRNNMRRAREVNLF* 1431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0148 1430 SUPERFAMILY alpha-D-mannose-specific plant lectins 105 252 IPR036426 -
Vvi6g0148 1430 Gene3D - 66 189 IPR036426 -
Vvi6g0148 1430 Gene3D - 897 1012 IPR036426 -
Vvi6g0148 1430 Gene3D Transferase(Phosphotransferase) domain 1 624 827 - -
Vvi6g0148 1430 Gene3D Transferase(Phosphotransferase) domain 1 1158 1364 - -
Vvi6g0148 1430 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 65 188 - -
Vvi6g0148 1430 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 890 1013 - -
Vvi6g0148 1430 FunFam Uncharacterized protein 189 283 - -
Vvi6g0148 1430 CDD PAN_AP_plant 386 466 - -
Vvi6g0148 1430 ProSiteProfiles Protein kinase domain profile. 549 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0148 1430 SUPERFAMILY Protein kinase-like (PK-like) 532 817 IPR011009 -
Vvi6g0148 1430 ProSiteProfiles Bulb-type lectin domain profile. 896 1014 IPR001480 -
Vvi6g0148 1430 CDD B_lectin 907 1016 IPR001480 -
Vvi6g0148 1430 SUPERFAMILY alpha-D-mannose-specific plant lectins 1038 1130 IPR036426 -
Vvi6g0148 1430 SMART serkin_6 549 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0148 1430 SMART serkin_6 1057 1353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0148 1430 Gene3D - 1013 1113 IPR036426 -
Vvi6g0148 1430 Gene3D - 190 287 IPR036426 -
Vvi6g0148 1430 Gene3D Phosphorylase Kinase; domain 1 1122 1157 - -
Vvi6g0148 1430 CDD B_lectin 82 191 IPR001480 -
Vvi6g0148 1430 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 1122 1157 - -
Vvi6g0148 1430 SUPERFAMILY alpha-D-mannose-specific plant lectins 216 305 IPR036426 -
Vvi6g0148 1430 ProSiteProfiles Protein kinase domain profile. 1057 1353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0148 1430 Pfam D-mannose binding lectin 943 1025 IPR001480 -
Vvi6g0148 1430 Pfam D-mannose binding lectin 118 205 IPR001480 -
Vvi6g0148 1430 FunFam Uncharacterized protein 1014 1108 - -
Vvi6g0148 1430 SUPERFAMILY Protein kinase-like (PK-like) 1134 1350 IPR011009 -
Vvi6g0148 1430 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 624 824 - -
Vvi6g0148 1430 ProSiteProfiles Bulb-type lectin domain profile. 71 189 IPR001480 -
Vvi6g0148 1430 SUPERFAMILY alpha-D-mannose-specific plant lectins 930 1076 IPR036426 -
Vvi6g0148 1430 FunFam Serine/threonine-protein kinase 1017 1142 - -
Vvi6g0148 1430 FunFam S-receptor-like serine/threonine-protein kinase 520 623 - -
Vvi6g0148 1430 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1157 1357 - -
Vvi6g0148 1430 Pfam Protein kinase domain 1134 1347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0148 1430 Pfam Protein kinase domain 552 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0148 1430 Gene3D Phosphorylase Kinase; domain 1 518 623 - -
Vvi6g0148 1430 FunFam Serine/threonine-protein kinase 192 334 - -
Vvi6g0148 1430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1199 1211 IPR008271 GO:0004672|GO:0006468
Vvi6g0148 1430 ProSitePatterns Protein kinases ATP-binding region signature. 555 577 IPR017441 GO:0005524
Vvi6g0148 1430 SMART blect_4 901 1016 IPR001480 -
Vvi6g0148 1430 SMART blect_4 69 191 IPR001480 -
Vvi6g0148 1430 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 77 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0148 Vvi-Chr6 1640235 1648262 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0148 494 835 Receptor kinase-like Gene Family AT1G56120 39.769 1.03e-64 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi6g0148 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0148 - - vvi:100262073 1553.11