Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0141 ATGAAAAGAATTCCGAAAAGCGAAGTGAAGCCAGGAAAGGGGAATCAAAATCTCCACTCAGAAGACACGGAGTCGACCCGTCACAGTCAACAAGGCACGGCGGATCGGAGAGTTCTTCGGTCTCGATATCTAGCTGTGAAGAATCTGATCAGTGATAAAAGAGATGATATATCGAGAGTAGGTTCCGATAAATTTAAGTCTATTATTAGCGAAGTGGAGAACCTGCATCAGTTTGTTCAGAAGCCAAGAGAGCAAGTTGCAGATGCAGAGGCTCTATTGGACATTGCTAACACCTTGGTGACCTCTGTCAAGTCACAGACCAATGCTGGTGTTACACCATCCGACTTAGTAACATGTTTCCTCAGCAAATATGGGCAACATGGAGGAGGATTCACCACAGAAAATCCTCGAATCCACTGGAAAAAAATTGGGATTGTTGTTTCACCCATTTTCAGAAAAGGGCAAGGGTGTTGCACCATGCTTGGACCTATGAACACTGAGTTGAAGCAAAGGAAAGTTGCTGTTCATCAAAAGCGTTCGAGGCAGCCTACTGAAAGCACTCGACCTGAAGAGCTTAATAATTATGGGGAAGAACACAGATCGGATACTGACAAGAATATGGCAACCATGTTTGAGATTCTGAGGAGGAAGAAGCAAGTCAAGCTTGAAAGCCTCATGTTGAACAGGAAGTCCTTTGCGCGGACAGTGGAGAACTTGTTTGCTCTGTCTTTCTTAGTCAAAGATGGACGAGCTGAAGTAGTTGTTGATGAGAATGGCTCACATTTAGTCTCACCTAAGAATGCTCCCGCTGCTAGTTCTGTGGTTGCCAGAGAGGTGGTTTACTCGCATTTTGTATTCAGATTTGACTTCAAAGACTGGAAGTTGATGATGGACTTGGTGCCAGCTGGGGAAGAGCTAATGCCACACAGGGATCGATCAAAAGGCCTGAATGCATCTCAGGCAGGCTTGGCACCTAATGATTACCAAGATACACTTCACGCAACACCAATCAAGAAATTTTCCAGGAATTGTGGCCTTGTCATACAAGAACAACTAGTCGTAAAAGAGGACCCTGATACAGGAGATGCTGCAGGTCGGAGATGTAGCAAGAGAGCAAGTCCTTTAGCTGATATTCCCACTGAGATGGTTTCAACTTTTTGA 1161 0.4479 MKRIPKSEVKPGKGNQNLHSEDTESTRHSQQGTADRRVLRSRYLAVKNLISDKRDDISRVGSDKFKSIISEVENLHQFVQKPREQVADAEALLDIANTLVTSVKSQTNAGVTPSDLVTCFLSKYGQHGGGFTTENPRIHWKKIGIVVSPIFRKGQGCCTMLGPMNTELKQRKVAVHQKRSRQPTESTRPEELNNYGEEHRSDTDKNMATMFEILRRKKQVKLESLMLNRKSFARTVENLFALSFLVKDGRAEVVVDENGSHLVSPKNAPAASSVVAREVVYSHFVFRFDFKDWKLMMDLVPAGEELMPHRDRSKGLNASQAGLAPNDYQDTLHATPIKKFSRNCGLVIQEQLVVKEDPDTGDAAGRRCSKRASPLADIPTEMVSTF* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0141 386 MobiDBLite consensus disorder prediction 1 37 - -
Vvi6g0141 386 PANTHER UNCHARACTERIZED 14 363 IPR027786 GO:0005634|GO:0006281|GO:0030915
Vvi6g0141 386 Pfam Nse4 C-terminal 219 306 IPR014854 -
Vvi6g0141 386 MobiDBLite consensus disorder prediction 172 201 - -
Vvi6g0141 386 MobiDBLite consensus disorder prediction 1 35 - -
Vvi6g0141 386 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0141 Vvi-Chr6 1568993 1572434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0141 32 373 Non-SMC Element family AT1G51130 53.448 2.86e-130 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0141 K22825 - vvi:100258687 737.258