Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0138 ATGGAGCTTGGAGGTGCTCGCAAGAGAGGGAGGCAAGAGGGTACTTTGAATGGAAATGGGGGATTCAAGAAATCCAAGCAAGAAATGGAGTCCTTTTCATCTGGTATAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACTTCTGGGTGCCCATTTGGTGAGGGATGCCACTTCTTGCATTATGTTCCTGGTGGCATTAAAGCAGTGTCTCAGATGGTTAATCTTGGGGGAAACACACCTCTTGCACCACCTGCAAGAAATCCTGCAGTGCCCCCTTCTTTCCCAGATGGTTCATCTCCACCAGCTGTGAAGACCCGCTTGTGCAACAAATACAACTCGGCTGAAGGCTGTAAGTTTGGGGATAAATGCCATTTCGCCCATGGTGAGTGGGAGCTTGGGAAGCCAACACTTCCATCCCATCATGAAGATCATCGTGGCATGGGATCAGGCAGGCTGGCTGGCAGGCTTGAGCCACCCCCACCTGGCCTTGCTGCAGCAGCTAGTTTTGGAGCCTCTGCCACTGCTAAAATCAGTGTTGATGCTTCACTGGCTGGAGCCATCATTGGGAAAAGTGGGGTGAACTCAAAGCAAATCTGTCGCCTGACTGGAGCCAAATTATCCATAAAGGACCATGATTCAGATCCAAACTTGAGGAACATTGAACTAGAGGGCACATTTGATCAGATCAAGCAAGCCAGCGCCATGGTTCGTGAACTCATTGTGAACATCAGCTCAGCCTCTGGGCCTCCCATGAGGAACCCAGCAATGCAAGCCTCTGCTGCAGCAAACAACTTCAAGACTAAGCTCTGCGAGAACTTCACGAAGGGGTCATGTACCTTTGGTGAGAGGTGTCACTTTGCGCATGGAGCTGATGAGTTACGCAAACCTGCAGGGATGTGA 906 0.5033 MELGGARKRGRQEGTLNGNGGFKKSKQEMESFSSGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQMVNLGGNTPLAPPARNPAVPPSFPDGSSPPAVKTRLCNKYNSAEGCKFGDKCHFAHGEWELGKPTLPSHHEDHRGMGSGRLAGRLEPPPPGLAAAASFGASATAKISVDASLAGAIIGKSGVNSKQICRLTGAKLSIKDHDSDPNLRNIELEGTFDQIKQASAMVRELIVNISSASGPPMRNPAMQASAAANNFKTKLCENFTKGSCTFGERCHFAHGADELRKPAGM* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0138 301 FunFam Zinc finger CCCH domain-containing protein 52 171 267 - -
Vvi6g0138 301 CDD KH-I_AtC3H36_like 178 242 - -
Vvi6g0138 301 SUPERFAMILY CCCH zinc finger 38 63 IPR036855 GO:0046872
Vvi6g0138 301 SUPERFAMILY CCCH zinc finger 103 135 IPR036855 GO:0046872
Vvi6g0138 301 Gene3D K Homology domain, type 1 170 263 IPR036612 GO:0003723
Vvi6g0138 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 291 IPR000571 GO:0046872
Vvi6g0138 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 131 IPR000571 GO:0046872
Vvi6g0138 301 Gene3D - 264 297 - -
Vvi6g0138 301 Gene3D - 99 136 - -
Vvi6g0138 301 SMART c3hfinal6 104 131 IPR000571 GO:0046872
Vvi6g0138 301 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Vvi6g0138 301 SMART c3hfinal6 37 64 IPR000571 GO:0046872
Vvi6g0138 301 MobiDBLite consensus disorder prediction 1 39 - -
Vvi6g0138 301 FunFam Zinc finger CCCH domain-containing protein 261 297 - -
Vvi6g0138 301 MobiDBLite consensus disorder prediction 18 39 - -
Vvi6g0138 301 Pfam RNA-binding, Nab2-type zinc finger 42 62 - -
Vvi6g0138 301 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 168 244 IPR036612 GO:0003723
Vvi6g0138 301 PANTHER CCCH ZINC FINGER/TIS11-RELATED 20 156 IPR045877 GO:0003729
Vvi6g0138 301 Pfam KH domain 176 240 IPR004088 GO:0003723
Vvi6g0138 301 SMART kh_6 173 243 IPR004087 GO:0003676
Vvi6g0138 301 SUPERFAMILY CCCH zinc finger 266 297 IPR036855 GO:0046872
Vvi6g0138 301 ProSiteProfiles Zinc finger C3H1-type profile. 104 132 IPR000571 GO:0046872
Vvi6g0138 301 ProSiteProfiles Zinc finger C3H1-type profile. 266 293 IPR000571 GO:0046872
Vvi6g0138 301 FunFam Zinc finger CCCH domain-containing protein 99 136 - -
Vvi6g0138 301 ProSiteProfiles Zinc finger C3H1-type profile. 37 65 IPR000571 GO:0046872
Vvi6g0138 301 ProSiteProfiles Type-1 KH domain profile. 174 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0138 Vvi-Chr6 1538773 1545697 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi6g0138 KH_1 1.2e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0138 - - vvi:100263958 583.178