Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0134 ATGGCATCTTCATTGGAAGACCTTCTTGCAGAGGAGGGGTTTCAAGGAAGGAGACTGAAGACAACACCTAGACCTTCCTTTGCATCAAGGGCTGTAAGTATGCCACTTTACCCTTTCCGAATCAATTGTAAGGCAGATGCTGGTTCAGTTGTTAAAATTCAGACTGCAAGGACAAGGTCCAGTGTGTCTCGATACAATTCAGAAGGTGAAGCACCACCTACTAATAGAGTGAAGGGGAGGAAACAGAAGGATAGCCTTATTAGAAGAGAGAAATTAGATCGAGAACCAAAGAAGGAACTGAATAAGAGATTTGAAGAAAGAGAGACTAATGATGTGTTTGAAGATTTTCCAGGAAATGAGATAGTTGAGGTAGGCGTGGAAGAGAATGGAAGATACAAAGATATATATTCAGATAAGGAGTACAGCCCCAGAAAGAGGAGCCATAAATCTTCTCATAGAATTGTTGAAAAGGAGAGAAATAAAGAGAGGTCTCGTAAAAGTATGGAGAACAACAAAATCTTTGATGAGAATCGGGGTCAAAATCATGACAGTACTGTACAGGCAGTCTCTGAACCTGCTCTTGATGAAGTTGCTGTCCAAGCCATGGTCTCCATCATAAGCGGTTTTGTCAAACGTTTTCTTAAAGACAAGGATTTTAGGACTTTGCTTCATCATAATTGCTTCTCTTCTCTTAATATTATTGATTTGGAAGAAGGTGAAAGTACTGCGAGCAAGGTCATAACAACACTTGAACAAGCAATTGAAACAGTAGAACTTGTTGCTGAGGAGTCTGCCAGTGGAAAAGACCTGAAAAAAGCTTCTTTGCAGCTCAGTGTAATTGCGGGTTTGAGCTCAGATGATATGAAGGATGGTTTTACATCTGGGGTTCCCAATTACAAGTTGTCAGCTTGTGCTCATCTCTACCTTGGTCTGATATATAAGCTACAGAAGAAGGATAAGGCATCAGCAAAGCATATTCTACAAGTGTTCTGCGATTCCCCCTTCCAGGCTCGGACCATGTTGTTGCCAGAGTTATGGGATTATCTGTTTCTTCCTCAGCTTTCACATTTGAAGGTGTGGTACAATCAGGAAGCTGATTCTCTAGCAGATGCACCTAGCAGACAAAGGAAACTTGAACTTCTTGAAAAAGTTTACAATGAAATTCTGGATTTGGGTACCCATCAATTTGCAATTTACTATAAGGATTGGCTCACTGAGGGGGTTGAAGCTCCTTCAGTCCCTTCCATCCATGTCCCTTCGGTGTCTGTTCGGGGAGTTGATCAGGGAAGTTCACAGAGCCACTATCAAGAGCTAGCTAATCCACTTGGTCCTTTCTCAACTCAGCCAATGGTCAGTAAAAAACTGTATAATACTGTATTTGGCAACTCAATCCAACCCCAAGTTGGTGAAGTGGAAGAGTACGGGGAGGCAGAGTATAATTGTATGAGAAGCTCTGATGATTCTGCTGTTGAGGATAAACAAGCACTGACACACTTCTCTGAAGCAGTTAAACATACTGACCAACATGCTAAAGAGCACCTCATGGAGAATCCTTATGATGAAGCAGCTCATCCTGAAGATGGACACTTACTGGAAGCTGAGGAATCAACAAGGTTGCATGGAGTGAGTGCTCCGGGTGAAAGAGATCCTAGTGATGAAGTTTGTGACTCTCATATAAGGCAGGTCCCTCCAGGAAGCTCCCACATGTTCCATGCACCTATACATAGAGCGAATGAGTCAACTCTCAGGACTCTAGCAAGATCAGTTTTTGACCTGCACATTTCTTCACAATCAAACAGTGAAGCAATTTTTGACCCCAATGTAATGAGTTCTTTAACCATTCTCTTGTCTTCTTTATTATGGCAAATATTGTTCATTTTTGACAATTTCTTCTTATACTTGTTTGGAATGCAGCAAACCAATATGGAGTCCTCTGCTAAAGATTTACATGGAAATTGTCAATATTTCAATGAAGGATCATTTTTCTCAAGCATTCCCCAGGATTTTATTTGCCCTTTGACTGGACGGTTGTTTGAAGATCCTGTGACCATTGAAACTGGTCAAACTTTTGAGCGACATGCCATCAGGGAATGGTTTAATCAGGGAAACAGAAACTGTCCAGTAACAGGAAAAGCATTGGAGGGTTTAGGTGTGCCACTTACCAACTTTATCTTGAAGCGTGTTATTGATGGCTGGAAATCTGAAAACTGCAGGCATCTCTTGGCTTTTGCCTCTAAGGTAGAGGGGAGCTCTGGGGAACATGGGGTTGAACCAAAGGATGAGACAGCTATTTACGCATTAGAGCAGTTTCTTAGTGGTTCTAGCAAAGAAGAAAAATTAACAAATGCAAAACACCTTATATCTCTTGGAGGTCTGCAGTTTCTTACTCGAAGATTTGAATTAGGAAACTTGGAAGAGAAAACATGTGTAGCTGCACTCATGTGCAGTTGTATTGAAGCCGATTACAGATGCAAAAATGAGATAGCAAAATATATTAAAAAACCGTGTCTTCTTGAGCTACTTCACAGTAAGCAGGCTAAATCAAGAACAAATGCGGTGTTGCTGCTGACTGAACTTATATGCATGCACAGGTGGAAAGATGTGACATTGTTCTTGAGCAGCTTTCAAAATGAAGGGATCATGAGTGCTATGCATGTTTTGCTTGTGTATCTTCAAAGTTCTTCACCCGAGCAACGGCCCTTAGTTGCTGTTCTCCTTCTACACTTAGATCTTCTGGTAGAACCTCGGAAGTACAGCATATATAGAGAGGAGGCTGTTGATGCTATTGTAGTGGCTCTTGAAGGCAGCTTAACTGACGAGAATGTCCGAGAAAAGTGTTGCAGGGCACTCCTAATCTTGACGGGGCATTTCTCTTTCTCTGGGGATGTGCCCACAGAGAAATGGATCCTAAAACCAGCTGGACCTATGGACAGTCATGATTTGAGTTCTTGTAATAATGAGGAGAATGGTCTATTAGTTGATGGAACCATTTCATTGGATGCTGAAGAACAGGCCAAGGAAGAGTGGTTTAGGAACTTATCAGCAGTTCTGCTTGGTAATGGACAGAAGTCATTCTTGGAGGCAATTTCCAAGTGTTTGGGCTCTGATAGCTCTGAACTGGTGAGGGTGTGCCTGACCACTGTGGCATGGTTGAGCAGTGCTCTTAGTTCACTATCAGATGCTGAATTCCAGCTCTCCGCCTTTTCAGCTCTCATCTCTAGGCTGAGAGATAATTTGGAAAACAGTGAGCAGATTGAACACAAAATTCTTGCCTCTGCGTCTCTGTTAAGTTTCAGCAAAATACCAGAGTGCAGGGTACTCTTGATGACGATTGCAGAAGAAATTGTGGTTCCTTTACGAAGCCTTGTACAAGTAACATGGACTGCAAAACATCTTTATACCACTATTTCTGGGGAAGATCTGTAA 3426 0.4197 MASSLEDLLAEEGFQGRRLKTTPRPSFASRAVSMPLYPFRINCKADAGSVVKIQTARTRSSVSRYNSEGEAPPTNRVKGRKQKDSLIRREKLDREPKKELNKRFEERETNDVFEDFPGNEIVEVGVEENGRYKDIYSDKEYSPRKRSHKSSHRIVEKERNKERSRKSMENNKIFDENRGQNHDSTVQAVSEPALDEVAVQAMVSIISGFVKRFLKDKDFRTLLHHNCFSSLNIIDLEEGESTASKVITTLEQAIETVELVAEESASGKDLKKASLQLSVIAGLSSDDMKDGFTSGVPNYKLSACAHLYLGLIYKLQKKDKASAKHILQVFCDSPFQARTMLLPELWDYLFLPQLSHLKVWYNQEADSLADAPSRQRKLELLEKVYNEILDLGTHQFAIYYKDWLTEGVEAPSVPSIHVPSVSVRGVDQGSSQSHYQELANPLGPFSTQPMVSKKLYNTVFGNSIQPQVGEVEEYGEAEYNCMRSSDDSAVEDKQALTHFSEAVKHTDQHAKEHLMENPYDEAAHPEDGHLLEAEESTRLHGVSAPGERDPSDEVCDSHIRQVPPGSSHMFHAPIHRANESTLRTLARSVFDLHISSQSNSEAIFDPNVMSSLTILLSSLLWQILFIFDNFFLYLFGMQQTNMESSAKDLHGNCQYFNEGSFFSSIPQDFICPLTGRLFEDPVTIETGQTFERHAIREWFNQGNRNCPVTGKALEGLGVPLTNFILKRVIDGWKSENCRHLLAFASKVEGSSGEHGVEPKDETAIYALEQFLSGSSKEEKLTNAKHLISLGGLQFLTRRFELGNLEEKTCVAALMCSCIEADYRCKNEIAKYIKKPCLLELLHSKQAKSRTNAVLLLTELICMHRWKDVTLFLSSFQNEGIMSAMHVLLVYLQSSSPEQRPLVAVLLLHLDLLVEPRKYSIYREEAVDAIVVALEGSLTDENVREKCCRALLILTGHFSFSGDVPTEKWILKPAGPMDSHDLSSCNNEENGLLVDGTISLDAEEQAKEEWFRNLSAVLLGNGQKSFLEAISKCLGSDSSELVRVCLTTVAWLSSALSSLSDAEFQLSAFSALISRLRDNLENSEQIEHKILASASLLSFSKIPECRVLLMTIAEEIVVPLRSLVQVTWTAKHLYTTISGEDL* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0134 1141 Gene3D - 754 962 IPR011989 -
Vvi6g0134 1141 ProSiteProfiles U-box domain profile. 664 739 IPR003613 GO:0004842|GO:0016567
Vvi6g0134 1141 MobiDBLite consensus disorder prediction 56 94 - -
Vvi6g0134 1141 MobiDBLite consensus disorder prediction 538 571 - -
Vvi6g0134 1141 MobiDBLite consensus disorder prediction 137 183 - -
Vvi6g0134 1141 CDD RING-Ubox_PUB 666 714 IPR045210 -
Vvi6g0134 1141 MobiDBLite consensus disorder prediction 153 179 - -
Vvi6g0134 1141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 739 IPR013083 -
Vvi6g0134 1141 Pfam U-box domain 665 736 IPR003613 GO:0004842|GO:0016567
Vvi6g0134 1141 MobiDBLite consensus disorder prediction 538 556 - -
Vvi6g0134 1141 SUPERFAMILY RING/U-box 658 739 - -
Vvi6g0134 1141 SUPERFAMILY ARM repeat 755 1107 IPR016024 -
Vvi6g0134 1141 PANTHER OS04G0584500 PROTEIN 1 1138 - -
Vvi6g0134 1141 SMART Ubox_2 668 732 IPR003613 GO:0004842|GO:0016567
Vvi6g0134 1141 MobiDBLite consensus disorder prediction 56 70 - -
Vvi6g0134 1141 MobiDBLite consensus disorder prediction 74 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0134 Vvi-Chr6 1452378 1459435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0134 664 934 U-box Gene Family AT1G23030 26.568 3.43e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0134 - - vri:117915582 2065.81