Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0122 ATGACTGCAAATCCCATCATCCGCTTTCCAGAATGTATGACGAGCAGGGATTATCTGGAAGATGATGTAGACTGTGTGTTCAATGAAGGTGTTTTGTCAAGAACTTTATTTGCTAGTGAAGACAGCAAACCGGCCCCTAAGAATCAAGCGAGATGTAAGAAGATTCCAGTTAAAGAAACCACTTCTGTCTATTATTCCAAGCATGCAAATGGAAAGAAGATGATCAATGAATATGTAAAAGAGCGGAAGATCAGTTGCAGAAAATATGGGAAAGTGGTATTATACCGAAACAGCAACAACGGAATGCTATTTGCTATCAAGATATTTTATAAGTGCAGTTTGCGGAAGGTGCATATAACACCTTCTGAAACAGCTATGAGCAACGTTCTTAGGGAGGTCTCAATTATGAAGATGTTGGAACACCCTAATATAGTTAATCTTGTTGAAGTGATTGATGATCCAAAATCAGATTATCTCTATATGGTTCTCGAGTATGTGGAAGGCAATGGGACATGTAACATTTCTGAAACTCAAGGAGTGGATGAGACAACAGCTCGAAGATACTTCAAGGACATACTTGCAGGGATCATTTATCTGCATAATCATAATGTTGTGCATGGAGATATAAAGCCTGAAAACCTTTTGCTCACCAAAAATGGAAGGGTAAAGATTGGAGATTTCGGTGTTAGCTATGTTTTTGAGGATGACAATGATGAATTCTGGAGATGCCTTGGAACACCTGCTTTCACAGCGCCTGAGTGCTGCTCAGATATAGTTTACCATGGGAAAGCTGCAGACACATGGGCTATGGGCATTACCTTATACTACATGGTAGTAGGCTGCTACCCTTTTATCGGTGATGGCATACTCGATACTTATGATAAGGTAAATAATTCCAACCATGGTAATGATTCTTCTACTTGGTATTCTTTTCTTATTTTGGTCATTTATATTTTATCTTTGTTACAGATAGTTAATACTCCTTTATCATTCCCCAAAGAATTGGATCCAGAACTAAAAGATCTGCTCCAAGGCCTTCTCTGCAAAGATCCAATGCAACGAACTACCTTAACTGCTGTGGCTGAGAATCCGTGGGTGATGAGGGAGGGTGGTACAGTGCCTCAGAGGCTGTGTGGCTGCAAGCTCAGAAACATCCAACCATGA 1164 0.4012 MTANPIIRFPECMTSRDYLEDDVDCVFNEGVLSRTLFASEDSKPAPKNQARCKKIPVKETTSVYYSKHANGKKMINEYVKERKISCRKYGKVVLYRNSNNGMLFAIKIFYKCSLRKVHITPSETAMSNVLREVSIMKMLEHPNIVNLVEVIDDPKSDYLYMVLEYVEGNGTCNISETQGVDETTARRYFKDILAGIIYLHNHNVVHGDIKPENLLLTKNGRVKIGDFGVSYVFEDDNDEFWRCLGTPAFTAPECCSDIVYHGKAADTWAMGITLYYMVVGCYPFIGDGILDTYDKVNNSNHGNDSSTWYSFLILVIYILSLLQIVNTPLSFPKELDPELKDLLQGLLCKDPMQRTTLTAVAENPWVMREGGTVPQRLCGCKLRNIQP* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0122 387 FunFam Serine/threonine-protein kinase Ssp1 72 174 - -
Vvi6g0122 387 CDD STKc_LKB1_CaMKK 88 366 - -
Vvi6g0122 387 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 50 368 - -
Vvi6g0122 387 SUPERFAMILY Protein kinase-like (PK-like) 69 368 IPR011009 -
Vvi6g0122 387 Pfam Protein kinase domain 80 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0122 387 SMART serkin_6 78 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0122 387 Gene3D Transferase(Phosphotransferase) domain 1 173 375 - -
Vvi6g0122 387 Gene3D Phosphorylase Kinase; domain 1 72 172 - -
Vvi6g0122 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vvi6g0122 387 ProSiteProfiles Protein kinase domain profile. 78 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0122 Vvi-Chr6 1236203 1241401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0122 74 374 CBL-interacting serine-threonine protein kinases AT5G10930 31.803 2.01e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Vvi6g0122 Pkinase 1.2e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0122 - - vvi:100251930 730.709