Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0120 ATGGCTCCAGGAGGTGGCATCTGCAAGGAAGTTTGCGAGTCCCGCTCTGCATTTGCAGACTATGATGTAACAACAGCAAATTTGGAACTAAGAAGTTCTCCTTTCAGAAAAGCAACTACTGGTGTTGGTGGAAAGCATGGAATGCCATCAACTAGTGGTGTGCATGAGCTGTTGGAATGCCCTGTTTGCATGGATCTAATGCACCCTCCTATTCACCAGTGTCCAAATGGCCACACTTTATGTTCCAACTGCAAGGCCAGAGTGCACAACTGTTGCCCAACTTGTCGCTTTGAGCTAGGGAATATAAGGTGTTTGGCTTTGGAAAAAATTGCGGAATCACTGGAACTTCCATGCAGATACCAAATTTTCGGTTGTCATGATATTTTCCCATATTACAGCAAGCTCAAGCATGAACAAAACTGCCAGTTTCGCCCATACAGCTGCCCGTATGCTGGGGCTGAGTGTTCTGTCACTGGCGATATTCCGCTCCTTGTCATGCACCTCAAGGATGATCACAAGGTTGATATGCATGATGGGTGTACTTTCAACCACAGATATGTCAAATCCAATCCCCAAGAAGTCGAAAATGCCACATGGATGCTGACTGTTTTCAACTGTTTTGGCAGGCAGTTCTGCTTACACTTTGAGGCATTCCATCTGGGAATGGCACCTGTTTACATGGCCTTTTTGCGGTTCATGGGCGACGAAAATGAAGCAAGGAAGTTCAGCTATAGTCTTGAGGTAGGCGGATATGGCAGAAAGCTAATATGGCAAGGAGTTCCCAGGAGCATTCGCGATAGCCATAAAATGGTTCGGGACAGCCAAGATGGACTCGTTATTCAGAGAAAGTTAGCACTTTTCTTCTCTGGTGGCGAGAGGCAGCAACTGAAGCTGAAGGTGGCCGGCCGTATTTGGAAAGAGCAGTGA 927 0.4682 MAPGGGICKEVCESRSAFADYDVTTANLELRSSPFRKATTGVGGKHGMPSTSGVHELLECPVCMDLMHPPIHQCPNGHTLCSNCKARVHNCCPTCRFELGNIRCLALEKIAESLELPCRYQIFGCHDIFPYYSKLKHEQNCQFRPYSCPYAGAECSVTGDIPLLVMHLKDDHKVDMHDGCTFNHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFHLGMAPVYMAFLRFMGDENEARKFSYSLEVGGYGRKLIWQGVPRSIRDSHKMVRDSQDGLVIQRKLALFFSGGERQQLKLKVAGRIWKEQ* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0120 308 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 301 IPR008974 GO:0005515
Vvi6g0120 308 ProSiteProfiles Zinc finger SIAH-type profile. 113 173 IPR013010 GO:0008270
Vvi6g0120 308 Pfam Seven in absentia protein family 102 300 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi6g0120 308 FunFam E3 ubiquitin-protein ligase SINAT5-like 169 301 - -
Vvi6g0120 308 SUPERFAMILY RING/U-box 53 100 - -
Vvi6g0120 308 SUPERFAMILY TRAF domain-like 113 304 - -
Vvi6g0120 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 167 IPR013083 -
Vvi6g0120 308 CDD RING-HC_SIAHs 58 96 - -
Vvi6g0120 308 FunFam E3 ubiquitin-protein ligase SINAT3 112 168 - -
Vvi6g0120 308 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 42 307 - -
Vvi6g0120 308 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 111 - -
Vvi6g0120 308 ProSiteProfiles Zinc finger RING-type profile. 60 96 IPR001841 -
Vvi6g0120 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 112 IPR013083 -
Vvi6g0120 308 CDD Sina 174 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0120 Vvi-Chr6 1222195 1223731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0120 1 308 C3H Transcription Factor Family AT2G41980 75.974 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0120 K04506 - vvi:100267231 662.144