Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0116 ATGCCGGAGCTGCGGAGAGGTGTACGACGTGGCCGTGATCCGATAGACCAGCGGGCGAAGCGATCGGAGCACTTGGTTGGGAACTACATACGGACCCGTGCCGCCGTTGCTAAGGCAAGGGCAGTGGAGGCGGCGGCAGCAGGGAAGGGGAAGGCAGTGGTAGTGGAGGCGCCGCGGGTAGCGAGGAGGAGGCAGAGGAAGGGGCAGGTGATTGTGATATCGGAGGGGCAGGGTGGTTCGGAAAAGGAGAGGTCGGAGAAGCCCGCGGAAGAAGAAGAGGGTGGGCTTTTGGGGGATAAGGAAGGGGGAGGAGGGGTTGGGAAGAAAGAAATGATGGGAGATGACAGTGGGGGCTTGAGCGCAAATAAAGCTACTGGGCAGGAGGAGGAAGGTAGCACCGCCCCGTTCCCAGAGAGGGTTCAAGTAGGGGGATCACCTGTATATAAAATTGAAAGGAAGTTGGGTAAGGGTGGTTTTGGTCAAGTGTTTGTTGGTCGCCGTGTTACAGGTGGAAATGAACGCACAAGTGGTCCTAGTGCTACGGAGGTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAACACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATGGTTATGGACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGGCAAGCGATGTCTTCAGAAATGGTAGCTTGTATTGCAGTTGAGTCTTTATCAATCCTAGAGAAGATGCACTCAAGAGGTTATGTGCATGGAGATGTAAAACCGGAAAACTTTTTACTGGGCCAGCCATCTACAACGCAAGAGAAGAAGTTGTTTCTTGTTGACCTTGGATTAGCAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGGGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAGCAGAAGAGACGATCTAGAGTCTCTTGCATATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAGGGCGACAATAAGTCCTTCCTAGTTTGCAAGAAAAAGATGGCAACTTCTCCTGAAATGCTTTGTTGCTTCTGCCCTACACCTCTTAAACAATTTCTTGAGATTGTTGTGAACATGAAATTTGATGAAGAGCCAAACTACTCCAAGCTAATATCTCTGTTTGAGGGATTAATTGGACCTAATCCAGCTATAAGGCCAATAAACACTGATGGTGCTCAGAAGATTATCTATCAAGTTGGTCAAAAACGGGGTAGGTTGAATGTTGAGGAAGAAGAAGATGGGCAACCCAAGAAAAAGGTTCGATTGGGAATTCCTGCTACCCAGTGGATTTCAGTATACAATGCTAGGCTACCGATGAAACAGAGGTATCATTACAATGTTGCTGATGGAAGATTGGCACAACATGTGGACAGAGGAAATGCAGATGGTCTGCTTATAAGTTGTGTTGCATCTTGCTCAAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCTGGTGCTAACAATGGAAGTTCCCTTGTTGTGATGTCCAAAGGCACACAATATACTCAACAGTCTTACAAAGTAAGCGACTCCTTTCCCTTTAAATGGATAAACAAGAAGTGGAGAGAAGGATTCCATGTAACTTCCATGGCAACTGCTGGAAGCCGATGGGGGGTAGTCATGTCTCGCAATGCTGGCTTTAGTGATCAGGTTGTGGAGCTTGATTTTCTCTATCCAAGTGAGGGCATCCACAGAAGGTGGGACAGTGGTTATCGAATAACATCAACGGCTGCAACTTGGGATCAATCTGCACTCATCTTGAGTGTGCCCAAGCGCAAACCTGGTGATGAAACTCAGGAAACTCTTAGGACATCCCAGTTTCCAAGTACACATGTTAAGGAAAAATGGGCAAAGAATCTCTATCTTGCCTGCGTGTGCTATGGACGAACTGTATCTTGA 2145 0.4741 MPELRRGVRRGRDPIDQRAKRSEHLVGNYIRTRAAVAKARAVEAAAAGKGKAVVVEAPRVARRRQRKGQVIVISEGQGGSEKERSEKPAEEEEGGLLGDKEGGGGVGKKEMMGDDSGGLSANKATGQEEEGSTAPFPERVQVGGSPVYKIERKLGKGGFGQVFVGRRVTGGNERTSGPSATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGVPRVHYKGKQGDYYVMVMDMLGPSLWDVWNSSGQAMSSEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPSTTQEKKLFLVDLGLATKWRDSANGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGYQGDNKSFLVCKKKMATSPEMLCCFCPTPLKQFLEIVVNMKFDEEPNYSKLISLFEGLIGPNPAIRPINTDGAQKIIYQVGQKRGRLNVEEEEDGQPKKKVRLGIPATQWISVYNARLPMKQRYHYNVADGRLAQHVDRGNADGLLISCVASCSNLWALIMDAGTGFTHQVYELSPFFLHKEWIMEQWERNFYISSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDSGYRITSTAATWDQSALILSVPKRKPGDETQETLRTSQFPSTHVKEKWAKNLYLACVCYGRTVS* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0116 714 Gene3D Transferase(Phosphotransferase) domain 1 119 468 - -
Vvi6g0116 714 ProSiteProfiles Protein kinase domain profile. 148 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0116 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Vvi6g0116 714 Pfam Protein kinase domain 148 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0116 714 FunFam casein kinase 1-like protein HD16 121 470 - -
Vvi6g0116 714 MobiDBLite consensus disorder prediction 1 22 - -
Vvi6g0116 714 MobiDBLite consensus disorder prediction 79 108 - -
Vvi6g0116 714 MobiDBLite consensus disorder prediction 65 140 - -
Vvi6g0116 714 CDD STKc_CK1 148 423 - -
Vvi6g0116 714 SMART serkin_6 148 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0116 714 ProSitePatterns Protein kinases ATP-binding region signature. 154 186 IPR017441 GO:0005524
Vvi6g0116 714 PANTHER CASEIN KINASE-RELATED 148 678 - -
Vvi6g0116 714 SUPERFAMILY Protein kinase-like (PK-like) 148 433 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0116 Vvi-Chr6 1190333 1199032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0116 122 305 EF-hand Containing Proteins AT5G66210 27.749 8.77e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vvi6g0116 Pkinase 5.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0116 - - vvi:100263956 1357.04