Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0100 ATGGAAAACGCAGATTCGTCTGAAGAGCCAGAGAAGAAGAGGCCTCATTTGAACACTCTGTCATCCCCCATGGCCCGAAACTCCAGTGTTTCTCCCGATAACCGAAGCGTTGATGCAACTTACCTCCAGTATCAGAATCAAAAACTTGTTCAGCAGTTAGAGGTGCAGAAGCATGAGTTGCATGACCTTGAAGACAAAATCAAAGAATTAAAAGACAGGCAAACTTCATATGATGACATGTTGATTACCATGAACCAACTCTGGAGTCAGTTGGTTGATGATTTAATCCTACTTGGAGTACGAGCGGGGGGAGGTCAAAATGCTATACAAACCTTGGACCATGCAGACCATTCTCGAGGTCTGATTCCATCATGTCCTGCTGAGGAGATATTTCTCTGTAGACTACTAGAAACAGATTCTGTTGAAAGCAATGGGAATGATGGAATTGTTAAATATGTTGAAGAAGCCCTTGCTTTGCGACATTCTTCTACTCTGGAGTTGATTAAATCCCTGGAAGATACCATTGATGCTCAGAGGGTCAAAACAGAAAACATAGCACAGGCTTTGCATGGAAAGCTATCTGCAGAAGATGCTATCATCCAATTAAGTAAGATTGATGATTTGATGAAAGAGGAAGCTAACAATCTGCGTGAGGTTATTGATGCTCTTCACTTAAAGCATAAGGAATATGTTGATGGGATTCAAACTTATGTTCACAGCCATTCGGTGGACCAATCTGAAATTAAACGCCTTGCAGGTGAGCTGGAAGAGAGCATGGCAGAACTTGAAGAAAGTAGAAGAAAGCTAGTTAATCTGAAAATGCAAAAGGATGTAGCATCTGTGGTGCATACCCCAGTTCAGGGTGCTGTAAATGGAAGCTTGTCCCCTGAAAAGCATGCAGACAGGACAATGGGTTTCAGAGAATTGAAGGATTCAGTTGAGGAAACAAAGATACTGGCAGCTGACCGTCTTTCTGAGCTCCATGAGGCACAGGAAGATAATCTAATCTTGTCCAAACAGTTGCAAGATCTACAGAATGAACTGAAGGATGACAAATATGTGTATTCATCTCGACCTTATACTTTACTCAATGATCAACTCCAACATTGGAATGCTGAAGCAGAACGATACAAATTACTGACAGATTCTCTCCAGGTTGTGCGAAGGGAGAAAGAACTGAATGCTAAATCAGAATTGGCTGATGCTGCCAGGAGTGTCATTGAAAATGACTCTAAAATTGAAGAGCTAGAACTCCAGCTGCAAAAATGTCTTATTGAAAAAAATGATCTTGAGGTTAAAATGAAAGAAGCTCTTCAAGATTCAGGTAGAAAAGATATTAAAGCAGAGTTCCATGTAATGGCCTCGGCCTTGTCTAAAGAAATGGGAATGATGGAATCTCAGTTGAATCGGTGGAAGGAGACAGCTCATGAAGCACTTTCATTACGGGAACAAGTCCAATCATTGAAAGCTTTGCTAAATAAAAAGACAAATGAACAAAAGTGCTTAGCAGATAAATGTGAGGAACAGATGGTGGAAATCAAATCTCTGAAGGCACTGATTGAGAAGTTGCAAAAGGGAAAATTGGAACTGCAGATCTTCGTGGATATGCATGGACAAGAAAGTTATGATAACAGGGACTTGATGGAAATCAAAGAATCAGAACATAAAGCTCACATGCAAGCTGAAGTTTTGAGAAATGCTCTAGATGAACACAGTCTGGAACTGCGAGTGAAGGCTGCTAATGAAGCTGAGGCTGCTTGCCAACAAAGGCTTTCTGCTGCCGAAGCAGAAATAGCTGATTTAAGAGCCAAACTGGATGCTTCTGAGAGGGATGTTTTGGAGCTTAAGGAGGCCATTAGAATTAAAGATGTGGAAGCAGAAGCTTATATTTCCGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTGCAGCAGGTGACTGAGAGGGATGATTACAATATCAAGCTGGTTTCTGAGAGTGTGAAGACAAAGCAAATGCAGAGTTTTCTACTCTCGGAGAAGCAGGCTTTAGCTAAGCAGCTTCAACAAGTCAACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAGATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACACCTTGCAGTCAGCCTGGAAACCGCAAAGTGGGAATTGGCTGATGCTGAGAAGGAATTGAAGTGGCTGAAATCTGCTCTTGCTTCTTCCGAGAAGGAATATGAGCAGATCCAGCGGAAAAAGGAGGAAGTTCAAATGGAATTGGACAATGAAAGAAGTGAGAGGCTGAAGCTGGAAGAAGAGCTGAAGGAATTGAATAGGGAGATTGCTGAGATGAGCTCTGAGAGTGGGGAGGCTGCAATACAGAAACTACAAGATGAAATCAAGGATGGCAAGGCAATTCTGAAATGCGGTGTGTGTTTTGACCGGCCAAAGGAGGTCGTAATCGTGAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAAAGAAATCTAGAGATCCGGCATCGCAAGTGCCCAGCTTGTGGAACTGCATTTGGGCAGAACGATGTTCGATTTGTAAAGATATGA 2625 0.4202 MENADSSEEPEKKRPHLNTLSSPMARNSSVSPDNRSVDATYLQYQNQKLVQQLEVQKHELHDLEDKIKELKDRQTSYDDMLITMNQLWSQLVDDLILLGVRAGGGQNAIQTLDHADHSRGLIPSCPAEEIFLCRLLETDSVESNGNDGIVKYVEEALALRHSSTLELIKSLEDTIDAQRVKTENIAQALHGKLSAEDAIIQLSKIDDLMKEEANNLREVIDALHLKHKEYVDGIQTYVHSHSVDQSEIKRLAGELEESMAELEESRRKLVNLKMQKDVASVVHTPVQGAVNGSLSPEKHADRTMGFRELKDSVEETKILAADRLSELHEAQEDNLILSKQLQDLQNELKDDKYVYSSRPYTLLNDQLQHWNAEAERYKLLTDSLQVVRREKELNAKSELADAARSVIENDSKIEELELQLQKCLIEKNDLEVKMKEALQDSGRKDIKAEFHVMASALSKEMGMMESQLNRWKETAHEALSLREQVQSLKALLNKKTNEQKCLADKCEEQMVEIKSLKALIEKLQKGKLELQIFVDMHGQESYDNRDLMEIKESEHKAHMQAEVLRNALDEHSLELRVKAANEAEAACQQRLSAAEAEIADLRAKLDASERDVLELKEAIRIKDVEAEAYISEIETIGQAYEDMQTQNQHLLQQVTERDDYNIKLVSESVKTKQMQSFLLSEKQALAKQLQQVNNALESLKMRIAQSEEQMKVCLAEALKYTQEDRHLAVSLETAKWELADAEKELKWLKSALASSEKEYEQIQRKKEEVQMELDNERSERLKLEEELKELNREIAEMSSESGEAAIQKLQDEIKDGKAILKCGVCFDRPKEVVIVKCYHLFCNPCIQRNLEIRHRKCPACGTAFGQNDVRFVKI* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0100 874 MobiDBLite consensus disorder prediction 1 37 - -
Vvi6g0100 874 PANTHER RING FINGER PROTEIN-RELATED 6 874 IPR013956 GO:0004842|GO:0010390
Vvi6g0100 874 SUPERFAMILY RING/U-box 821 866 - -
Vvi6g0100 874 CDD RING-HC_Bre1-like 814 870 - -
Vvi6g0100 874 Coils Coil 478 498 - -
Vvi6g0100 874 Coils Coil 413 440 - -
Vvi6g0100 874 Coils Coil 506 526 - -
Vvi6g0100 874 Coils Coil 327 347 - -
Vvi6g0100 874 Coils Coil 731 807 - -
Vvi6g0100 874 ProSitePatterns Zinc finger RING-type signature. 837 846 IPR017907 -
Vvi6g0100 874 Pfam Zinc finger, C3HC4 type (RING finger) 820 862 - -
Vvi6g0100 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 803 873 IPR013083 -
Vvi6g0100 874 MobiDBLite consensus disorder prediction 20 37 - -
Vvi6g0100 874 SMART ring_2 822 860 IPR001841 -
Vvi6g0100 874 Coils Coil 46 80 - -
Vvi6g0100 874 MobiDBLite consensus disorder prediction 1 16 - -
Vvi6g0100 874 Coils Coil 577 618 - -
Vvi6g0100 874 Coils Coil 679 716 - -
Vvi6g0100 874 Coils Coil 245 275 - -
Vvi6g0100 874 ProSiteProfiles Zinc finger RING-type profile. 822 860 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0100 Vvi-Chr6 1036681 1052248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0100 806 869 RAD5 or RAD16-like Gene Family AT5G05130 32.812 6.16e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0100 K10696 - vvi:100251829 1649.8