Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0089 ATGCGAAGTTCTTGGGCGGATTCTGTTGTGAACTCTGCAGCTGAGAATGTAGCTGCTGGTTCTTCTGCTAGTAACGGGGTTGCTACTGCTGCTAAGCCTACCAGAGGTGCATACATTCCTCCTCATCTCCGCAACCTTACACCCTCATCAGAGCCACCAGCACCAGCTTACAGTGGCCCATCTTCTGCAAATGATCGATCTGGATATAGTGGAAATCGGTGGGGTGGTCCCAGGAATGACTCTAATCAGACTGGTTACAGTAGTGGTGGCCGCACAGGTGGTTGGAATAATAAAAGTGGTGGGTGGGATCGCGGGAGAGAGCGGGAAGTAAACCCTTTTGGGGATGATGTTGATACAGAAAAGGTATTTAGTGAGCAAGAGAATACGGGTATTAACTTTGATGCCTATGAAGATATTCCAGTGGAGACTAGTGGGGATAATGTGCCTCCTCCAGTGAATACCTTTGCAGAGATTGACTTGGGTGAAGCACTCAATCAAAATATCAAGAGGTGCAAGTATGTGAAGCCGACACCTGTGCAGCGGCATGCCATTCCAATTTCCCTGGCAGGGCGAGATCTGATGGCATGTGCCCAGACTGGATCCGGAAAGACAGCAGCATTTTGCTTTCCGATTATCAGTGGGATTATGAAGGGGCAGGCTTCACAGAGACCACCGCGGGGGGCACGTACAGTATACCCACTTGCTCTCATTCTTTCTCCTACAAGGGAGCTCTCTTGCCAGATACATGATGAAGCTAAGAAATTTTCATATCAAACTGGAGTGAAGGTGGTTGTTGCTTATGGAGGAGCACCAATTAGTCAACAGCTGCGGGATCTAGAAAGAGGTGTTGATATTCTGGTGGCGACTCCTGGACGGTTGGTAGATTTGCTCGAGAGGGCAAGAGTTTCATTACAGATGATAAGGTATTTAGCTCTAGATGAGGCAGATCGAATGCTGGATATGGGGTTTGAACCGCAAATAAGGAAAATTGTGGAACAAATGGATATGCCTCCGCAGGGTGTAAGACAGACAATGCTGTTCAGTGCCACCTTTCCAAAAGAGATACAGAAACTAGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGGCTGTTGGAAGAGTTGGTTCGAGTACTGACTTAATTGTCCAAAGAGTTGAGTTTGTTCATGATACTGACAAGAGAAGTCATCTCATGGATCTTCTTCATGCGCAGAGGGCAAATGGTGTCCATGGAAAGCAATATCTGACTTTAGTCTTTGTGGAGACTAAGAAAGGTGCTGATTCGCTGGAACATTGGTTGTGTATGAATGGTTTTCCTGCAACTACTATTCATGGTGACAGAACACAACAGGAAAGAGAACAGGCATTGAGGTCATTTAAAAGCGGTGTCACCCCAATTTTGGTTGCTACAGATGTGGCAGCCCGTGGTCTTGATATTCCCCATGTTGCGCATGTTGTCAACTTTGACCTACCAAATGACATTGATGATTATGTCCACCGAATTGGGAGGACAGGACGTGCTGGGAAAACAGGTTTAGCGACTGCATTCTTCAATGACAACAATTCGTCATTGGCAAAGGCTTTATCTGAGCTAATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTGTCACGTTATGCAGCTCGATCTCCTTATGTTGGAAGGAACCGTCGTTCTGGGGGAGGAGGCCGGTTTGGTGGCCGTGACTTTCGAAGAGATGCCTCTTTTAATAGGGGCGGCACAGATTACTATAGCGGAGGCAACAGCAGCACTGGATATGGGACTGCTGGCGGATATGGAGGAGGATATGGTTCAGGGGTGACCAGCGCGTGGGACTAA 1839 0.472 MRSSWADSVVNSAAENVAAGSSASNGVATAAKPTRGAYIPPHLRNLTPSSEPPAPAYSGPSSANDRSGYSGNRWGGPRNDSNQTGYSSGGRTGGWNNKSGGWDRGREREVNPFGDDVDTEKVFSEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNQNIKRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMKGQASQRPPRGARTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPISQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQGVRQTMLFSATFPKEIQKLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVHDTDKRSHLMDLLHAQRANGVHGKQYLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREQALRSFKSGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDNNSSLAKALSELMQEANQEVPAWLSRYAARSPYVGRNRRSGGGGRFGGRDFRRDASFNRGGTDYYSGGNSSTGYGTAGGYGGGYGSGVTSAWD* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0089 612 SMART ultradead3 172 384 IPR014001 -
Vvi6g0089 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 524 IPR027417 -
Vvi6g0089 612 Pfam Helicase conserved C-terminal domain 393 508 IPR001650 -
Vvi6g0089 612 MobiDBLite consensus disorder prediction 101 115 - -
Vvi6g0089 612 MobiDBLite consensus disorder prediction 33 115 - -
Vvi6g0089 612 CDD DEADc_DDX3_DDX4 154 375 IPR044763 GO:0003724|GO:0005524
Vvi6g0089 612 Gene3D - 111 371 IPR027417 -
Vvi6g0089 612 Gene3D - 372 550 IPR027417 -
Vvi6g0089 612 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Vvi6g0089 612 SMART helicmild6 427 508 IPR001650 -
Vvi6g0089 612 MobiDBLite consensus disorder prediction 56 95 - -
Vvi6g0089 612 Pfam DEAD/DEAH box helicase 177 358 IPR011545 GO:0003676|GO:0005524
Vvi6g0089 612 FunFam Probable ATP-dependent RNA helicase DDX4 116 371 - -
Vvi6g0089 612 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 121 547 - -
Vvi6g0089 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 547 IPR001650 -
Vvi6g0089 612 CDD SF2_C_DEAD 381 517 - -
Vvi6g0089 612 FunFam ATP-dependent RNA helicase RhlB 372 550 - -
Vvi6g0089 612 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 369 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0089 Vvi-Chr6 957957 972356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0089 151 540 Eukaryotic Initiation Factors Gene Family AT3G19760 31.566 6.06e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0089 K11594 - vvi:100250155 1116.68