Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0088 ATGAGCTTCGATCCGGTTCCCTCGTCGAACAATCATGGCAACCTCGACGAGCAGATATCGCAGCTGATGCAGTGCAAGCCGTTGTCGGAGCAGGAGGTTAGGATGCTTTGTGAGAAGGCTAAGGAGATATTAATGGAAGAAAGCAATGTCCAGCCTGTGAAAAGCCCTGTGACAATCTGTGGTGATATCCATGGCCAGTTTCATGATCTAGCGGAGCTTTTCCGAATTGGAGGAAAGTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTATTATTCTGTTGAAACTGTCACGCTCCTGGTGGCCCTAAAAGTGCGCTATCCTCAACGGATTACTATTCTAAGAGGAAATCATGAAAGCCGACAGATCACTCAAGTTTATGGGTTTTACGATGAATGCCTACGAAAGTATGGCAATGCTAATGTTTGGAAGATCTTTACAGATTTATTTGATTATTTCCCACTGACAGCATTGGTTGAATCTGAAATATTTTGCCTGCATGGTGGGTTGTCCCCATCTATCGAGACCCTTGATAACATACGCAATTTTGACCGTGTTCAAGAAGTTCCTCATGAGGGGCCCATGTGTGATCTTTTATGGTCTGACCCAGATGATCGCTGTGGTTGGGGTATCTCGCCTAGGGGTGCTGGATATACTTTTGGCCAGGACATATCTGAACAATTTAATCACACAAACAACTTGAAGCTGATCGCTAGAGCTCACCAACTGGTTATGGAGGGATTCAACTGGGGCCATGTAACTACTTTCCCCTACTATTGA 795 0.4478 MSFDPVPSSNNHGNLDEQISQLMQCKPLSEQEVRMLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGFNWGHVTTFPYY* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0088 264 Gene3D - 7 262 IPR029052 -
Vvi6g0088 264 SUPERFAMILY Metallo-dependent phosphatases 11 258 IPR029052 -
Vvi6g0088 264 CDD MPP_PP2A_PP4_PP6 14 257 - -
Vvi6g0088 264 ProSitePatterns Serine/threonine specific protein phosphatases signature. 119 124 IPR006186 GO:0016787
Vvi6g0088 264 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 14 257 IPR047129 GO:0004722
Vvi6g0088 264 SMART pp2a_7 28 263 IPR006186 GO:0016787
Vvi6g0088 264 Pfam Calcineurin-like phosphoesterase 56 247 IPR004843 GO:0016787
Vvi6g0088 264 PRINTS Serine/threonine phosphatase family signature 56 83 IPR006186 GO:0016787
Vvi6g0088 264 PRINTS Serine/threonine phosphatase family signature 153 179 IPR006186 GO:0016787
Vvi6g0088 264 PRINTS Serine/threonine phosphatase family signature 238 258 IPR006186 GO:0016787
Vvi6g0088 264 PRINTS Serine/threonine phosphatase family signature 182 209 IPR006186 GO:0016787
Vvi6g0088 264 PRINTS Serine/threonine phosphatase family signature 118 142 IPR006186 GO:0016787
Vvi6g0088 264 PRINTS Serine/threonine phosphatase family signature 85 112 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0088 Vvi-Chr6 945412 953078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0088 36 244 Calmodulin-binding Proteins AT5G63870 34.661 3.14e-33 121