Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0076 ATGAGGGGAAGGAGTTACAGTCCCTCGCCACCAAGGGGCTATGGCCGAAGGGGGCGGAGCCCTAGCCCAAGAGGCCGTTATGGTGGTCGTGGTAGTGCTAGAGATCTCCCGACTAGTCTTCTAGTTCGCAACCTTCGTCATGATTGCAGGGGTGAAGACCTTCGAAGGCCATTTGGGCAGTTTGGTCCTCTTAAGGATATTTACTTGCCCAGGGATTATTATACTGGGGAACCGAGGGGCTTTGGTTTTGTCCAATATGTGGACCCTGCTGATGCTGCAGAAGCTAAATATCAAATGGATGGTCAGATTCTTCATGGCCGGGAGTTGACTGTTGTATTTGCGGAGGAGAATAGGAAGAAACCTTCTGATATGAGGGCAAGAGAGCGTGGAAGGGGTCGATTTTATGATCGAAGAAGGTCTCCCCTTCGTTATTCCCGATCCCCACCGCCACGGCACGCAAGATCTCCGTCCCGTGGACGTGATTATTATTCCCCTTCACCTAAGCGGCGACAGTACTCAAGGTCTGTTTCCCCACAAGATAGGAGGTACAGTCGAGATAGGTCATACACGCCTGATGGTAGGAGGAGGTCGTACACCCGTTCACCACCCTACAATGGTTCTAGGAGCCGCAGCCAGAGCCCAATAAGGGGTGAAAGTCCGAGCAGGCTCCAAAGCCGTAGCCCAGATCCTGAAGATTACCCACGAGAAGCAGTGAGAGATAGGTCTCCCAGTGAGTGA 738 0.5271 MRGRSYSPSPPRGYGRRGRSPSPRGRYGGRGSARDLPTSLLVRNLRHDCRGEDLRRPFGQFGPLKDIYLPRDYYTGEPRGFGFVQYVDPADAAEAKYQMDGQILHGRELTVVFAEENRKKPSDMRARERGRGRFYDRRRSPLRYSRSPPPRHARSPSRGRDYYSPSPKRRQYSRSVSPQDRRYSRDRSYTPDGRRRSYTRSPPYNGSRSRSQSPIRGESPSRLQSRSPDPEDYPREAVRDRSPSE* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0076 245 MobiDBLite consensus disorder prediction 174 194 - -
Vvi6g0076 245 MobiDBLite consensus disorder prediction 118 143 - -
Vvi6g0076 245 MobiDBLite consensus disorder prediction 1 36 - -
Vvi6g0076 245 MobiDBLite consensus disorder prediction 118 245 - -
Vvi6g0076 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Vvi6g0076 245 MobiDBLite consensus disorder prediction 200 226 - -
Vvi6g0076 245 Gene3D - 30 214 IPR012677 -
Vvi6g0076 245 SUPERFAMILY RNA-binding domain, RBD 38 140 IPR035979 GO:0003676
Vvi6g0076 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Vvi6g0076 245 SMART rrm1_1 39 112 IPR000504 GO:0003723
Vvi6g0076 245 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 37 228 - -
Vvi6g0076 245 MobiDBLite consensus disorder prediction 228 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0076 Vvi-Chr6 841216 845667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0076 38 165 Eukaryotic Initiation Factors Gene Family AT4G34110 26.357 5.08e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0076 K12900 - vvi:100263951 420.624