Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0062 ATGAACTACCTCCGCCCTTCCGTCAAGCGCGGCCAGATCGCCCCCGATGAAGAGGATCTCATTCTCCGCCTCCACCGACTTCTCGGCAACAGGTGGGCTTTGATTGCCGGAAGAATTCCGGGCCGGACGGATAATGAGATAAAAAACTACTGGAACACACACCTGAGCAAGAAGCTGATCAGCCAGGGAATAGATCCGAGAACCCATAAGCCATTGAACCCTAATTCATCTGTTGATGTGAAAGCTTCTTCTTCAAAGGCAAAAGCTGTTATGAACCCTAACCCTAACCCCAACCCTAATCCTTCTCCTTCAGAAAAAGCAGCAGCCAACAAGGAAGCTGGGAACTTCAAGAGTGACAATCAGTATCAGATTGGGGCAGCTGGCAATGATGGCAGTGCCAATATCCAGAATTCGGATGGTTCCGGGACCGGATTGAGGAGCAGCAACAACGAAGAAGACGATGACCTTAACTGTGGCACCGATGATGTCTTCTCTTCATTTTTGAACTCATTGATCAATGAGGATTTGTTTCCTGGACAACACCATCTCCAACAACAGCACCATGGTGGTCTCATTGCACCGGGCTCCGATGCTTTGATCTCTACTTCTTCAGTCCAGTCGTTCGGGTTCGGTACCAGCTGGGAGGCTGCAGCCATGACTTCCACGTCTGCTTTTAGCCAAATCGATCACTCCAAGAGGTTTAACGATCAACCTGATAAGCGGTTCTGA 729 0.4952 MNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWALIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPNSSVDVKASSSKAKAVMNPNPNPNPNPSPSEKAAANKEAGNFKSDNQYQIGAAGNDGSANIQNSDGSGTGLRSSNNEEDDDLNCGTDDVFSSFLNSLINEDLFPGQHHLQQQHHGGLIAPGSDALISTSSVQSFGFGTSWEAAAMTSTSAFSQIDHSKRFNDQPDKRF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0062 242 MobiDBLite consensus disorder prediction 63 158 - -
Vvi6g0062 242 ProSiteProfiles Myb-like domain profile. 5 55 IPR001005 -
Vvi6g0062 242 Pfam Myb-like DNA-binding domain 14 55 IPR001005 -
Vvi6g0062 242 Gene3D - 14 90 - -
Vvi6g0062 242 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 105 - -
Vvi6g0062 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 59 IPR017930 -
Vvi6g0062 242 SMART sant 9 57 IPR001005 -
Vvi6g0062 242 CDD SANT 15 55 IPR001005 -
Vvi6g0062 242 FunFam transcription repressor MYB5-like 14 85 - -
Vvi6g0062 242 MobiDBLite consensus disorder prediction 114 147 - -
Vvi6g0062 242 MobiDBLite consensus disorder prediction 68 93 - -
Vvi6g0062 242 SUPERFAMILY Homeodomain-like 1 62 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0062 Vvi-Chr6 744788 745772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0062 1 174 MYB Transcription Factor Family AT3G13540 50.575 5.35e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi6g0062 Myb_DNA-binding 3.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0062 K09422 - vvi:100232973 444.506