Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0058 ATGTTTCAAGTCTGGAAGGCCTGTGATGATTGCCTGGGTGGGTTTCATTTGAAGTGTTTGAAACCTCCGCTGAAGGAGGTTCCAGAAGGGGATTGGATATGCCAGTTTTGCGAGGCCCGGAAATTGGGTAAGGAAGTTGTTCTTCCAAATCCACCCAAAGGGAAGAAACAGAAGAGAACTGCAAGGGAGAAGCTTCTTTCCAGTGATTTATGGGCGGCTCATATTGAAAAGTATAATGTGCAGTATATGGAAAGAAGTGGATGGTACTTACTGGTTTCGGGGCGTTGGTATATTATCCCTGAAGAGACTGCAGCTGGAAGACAGCCGCATAATCTAAGAAGGGAGCTTTATAGGACAAATGATTTTGCTGACATTGAGATGGAATCCGTCATTAGGCTTTGCAATGTAATGAGCCCAAAAGAATTTACCAAGGCCAATAATGAAGGTGATGATATTTTCTTATGTGAATATGAATATGACATGCATTGGCACAGTTTCAAGCGTCTTGCAGAGATCAATAATGGTGAAGAAGTAAGAATTTTAGACAATCGAAGTAGCAATTTGAGGATTATTGTGTTCTCTTCTAGTTTATGGGCTTACTATCTCATTTGTCAGGGCAATGAAGAAGCTGACAATGATGTAGATTGGGATTATGGAAAGGACTCAGGCTCTGATACTGAAGAAGACATGGAATATGAAGAGGGAAATGTGAACAATTTACCCAGTGGACCATCCCCAGCTCATGCAGTTGCTGCAAATTCATGGAAGGGAAGGATCTTTGGGCTAAACAAAATTGGGACAAAGAAAATTCTAGGGCATGTGAGATGCCATAAGCAGACTGAACTTGAAAGAGCAAAAGCAACACTTCTGTTGACAACTTTGCCCAAGTCTCTACCTTGCAGGATTAAGGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTCTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAGACAATGAGTGTACTTTCAGTAATGAGGAATCTAAGGTCTGAAGTTGATGCAGGAAGCATAAAACCCTACTGTTTTGTGGATATTAATGGTCTAAAATTGGCATCATCAGAGAACATTTACAGGGTTATATATGAGGCATTAAGTGGTCATAGGGTTGGTTGGAAAAAGGCTCTTCACTTGCTGAATGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGGAGATCCGGCCTTGTATTCTACTTATTGATGAACTTGATCTTCTCGTAACCAGAAATCAGTCGGTTCTGTACAACATTCTTGATTGGCCTACTAAGCCACATTCCAAATTGATCGTGATAGGGATAGCAAATACCATGGATCTTCCAGAGAAGTTGCTTCCCCGTATTTCAAGCCGAATGGGTATTCAAAGGCTTTGTTTTGGGCCCTATAATTATCAACAGTTACAAGAAATCATTCCAAGTCGTCTTCAAGGAATTGATGCATTTGAAAGGCAAGCTATAGAATTTGCTTCAAGAACGGTGACAGCTATTTCTGGAGATGCACGTCGTGCTTTGGAGATATGTAGGCGTGCAGCAGAGCTTGCAGATTATCATATTAAAAAGCTAGCTTCACCTCCTGATTCTTCTTCTGAAGGAAAAGCCCTTGTTGGAATGGCAGAGGTAGAAGCAGCCATACAGGAAATGTTCCAGGCACCTCATATTCAAGTGATGAAGAGTAGCTCAAAGCTGAGTAAAATCTTCTTAGTAGCAATGGTGCATGGACTCTATCAAACAGGAATGGTGGAGACCACTTTTGAAAAGTTGTCAGTGACTGTTTCATGCCTATGTACAAGCAATGGAGAAAAGTTCCCTGGATGGGACACACTCTTAGAGTTGGTTGTAAGCTTGGTGAATGCAGAATCATTCTATGTTAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCTAAGTATCTGTGA 2025 0.4148 MFQVWKACDDCLGGFHLKCLKPPLKEVPEGDWICQFCEARKLGKEVVLPNPPKGKKQKRTAREKLLSSDLWAAHIEKYNVQYMERSGWYLLVSGRWYIIPEETAAGRQPHNLRRELYRTNDFADIEMESVIRLCNVMSPKEFTKANNEGDDIFLCEYEYDMHWHSFKRLAEINNGEEVRILDNRSSNLRIIVFSSSLWAYYLICQGNEEADNDVDWDYGKDSGSDTEEDMEYEEGNVNNLPSGPSPAHAVAANSWKGRIFGLNKIGTKKILGHVRCHKQTELERAKATLLLTTLPKSLPCRIKEMEEITAFIKGAICNDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRSEVDAGSIKPYCFVDINGLKLASSENIYRVIYEALSGHRVGWKKALHLLNERFADESKIAKEEIRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIIPSRLQGIDAFERQAIEFASRTVTAISGDARRALEICRRAAELADYHIKKLASPPDSSSEGKALVGMAEVEAAIQEMFQAPHIQVMKSSSKLSKIFLVAMVHGLYQTGMVETTFEKLSVTVSCLCTSNGEKFPGWDTLLELVVSLVNAESFYVKQELSIGCRSCSSIFQAFALKDDKELPWLAKYL* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0058 674 Pfam ATPase family associated with various cellular activities (AAA) 327 472 IPR003959 GO:0005524|GO:0016887
Vvi6g0058 674 Gene3D - 278 475 IPR027417 -
Vvi6g0058 674 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 83 637 - -
Vvi6g0058 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 61 IPR013083 -
Vvi6g0058 674 SMART AAA_5 322 476 IPR003593 GO:0016887
Vvi6g0058 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 292 536 IPR027417 -
Vvi6g0058 674 Gene3D - 65 199 IPR043151 -
Vvi6g0058 674 ProSiteProfiles BAH domain profile. 38 170 IPR001025 GO:0003682
Vvi6g0058 674 FunFam Origin recognition complex subunit 1 475 567 - -
Vvi6g0058 674 Pfam AAA lid domain 499 535 IPR041083 -
Vvi6g0058 674 SMART BAH_4 25 170 IPR001025 GO:0003682
Vvi6g0058 674 Pfam PHD-finger 7 39 IPR019787 -
Vvi6g0058 674 SUPERFAMILY FYVE/PHD zinc finger 6 43 IPR011011 -
Vvi6g0058 674 Pfam BAH domain 92 168 IPR001025 GO:0003682
Vvi6g0058 674 Gene3D - 476 567 - -
Vvi6g0058 674 FunFam Origin recognition complex subunit 1 279 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0058 Vvi-Chr6 705886 712976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0058 8 674 Core DNA Replication Machinery Family AT4G14700 63.918 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi6g0058 AAA 9.4e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0058 K02603 - vvi:100244935 1108.2