Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0054 ATGGAACTCTATTTCCAGAATCACCCAAATGGGGTGTCTTCACCCTGCAAACAGACCAAGGTCAGGGAAAGAACAGCAACCAACAAATGCAGCAAAAGCGGCAAGTTTGTTGGGGTGAGGCAAAGGCCTTCTGGGAAATGGGTGGCAGAGATCAAGAACACGACACAGAAGATTAGAATGTGGCTGGGGACATTCAACACTGCTGAAGAGGCTGCTCGAGCTTATGATGAAGCTGCCTGCCTTCTTCGTGGTTCCAACACCCGAACCAACTTTGCCACTCATGCCCCTACCAATTCTCCGCTCTCTTTGAAGATCAGAAACCTGCTCCATCGCAAAAAGAGTTTAAAACAAAATCATCCTCCGCCTCCTGCTGCTCTGACAACTATTCCCACTGAAATGAGTACTGGAGCTAGTTCTACTAGTGGTAACAGTCATAGCATTAATGCTAGTCATGCATCTAATGTTGTGAAACAAGATATCCAAATGTTTGATGATGCATATAGACCTGATTTGAGCAACTGCATTGGGGAGCTCAGACTAGGTTCATCTCAATTTGATCCCTCCTGGGTATTTCCAGCTGGTTCTGATTGGCTTCAATCAACCCAGGACGGTTTTGAGTTTCCTAAACATGCTGAGTTGTTGTCCAGAGCAACAGACCTAGATATGACGGAATTCGGGCTCATGAAAGTAGAGAGACATTTATCAGCATCATTCAATGCCATGAATGGAGTAAATGAGTACATGGAAAATGTTTACGATTCCAATGATGCTTTCTGGGATCCTTCACTGTGTCAGCTGTTCTGCACAGGTTGA 813 0.4514 MELYFQNHPNGVSSPCKQTKVRERTATNKCSKSGKFVGVRQRPSGKWVAEIKNTTQKIRMWLGTFNTAEEAARAYDEAACLLRGSNTRTNFATHAPTNSPLSLKIRNLLHRKKSLKQNHPPPPAALTTIPTEMSTGASSTSGNSHSINASHASNVVKQDIQMFDDAYRPDLSNCIGELRLGSSQFDPSWVFPAGSDWLQSTQDGFEFPKHAELLSRATDLDMTEFGLMKVERHLSASFNAMNGVNEYMENVYDSNDAFWDPSLCQLFCTG* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0054 270 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Vvi6g0054 270 MobiDBLite consensus disorder prediction 128 148 - -
Vvi6g0054 270 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Vvi6g0054 270 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Vvi6g0054 270 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Vvi6g0054 270 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Vvi6g0054 270 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Vvi6g0054 270 FunFam ethylene-responsive transcription factor RAP2-11 34 93 - -
Vvi6g0054 270 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 185 - -
Vvi6g0054 270 MobiDBLite consensus disorder prediction 114 148 - -
Vvi6g0054 270 CDD AP2 35 94 IPR001471 GO:0003700|GO:0006355
Vvi6g0054 270 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0054 Vvi-Chr6 672384 673196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0054 18 268 AP2-EREBP Transcription Factor Family AT5G19790 47.104 6.05e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi6g0054 AP2 5.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0054 K09286 - vvi:100245016 535.798