Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0040 ATGGCTGCCGCCGCTCGCCCTCTCGTCACCGTTCAGGTGCTCAAGTCGGATATGGCCACAGACGGCGGCAACGCAGTCCCTCTCCCGGATGTCATGAAGGCCTCCATCCGGCCAGACATCGTCAACTTCGTCCACTCCAACATCTCCAAAAATAGCCGCCAACCCTACGCCGTTAGCCGTCGCGCTGGTCATCAGACCTCCGCCGAGTCCTGGGGTACTGGCCGCGCCGTCTCCCGTATCCCTCGTGTTCCGGGTGGTGGTACTCACCGCGCTGGCCAGGGTGCCTTCGGAAACATGTGCCGTGGCGGTAGGATGTTCGCCCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCAACCAGAAGCGGTACGCAGTGGTTTCCGCCATCGCCGCCTCAGCCGTCCCCTCACTCGTGATGGCTCGTGGGCACAGGATTGAATCCGTCCCGGAGCTTCCTCTGGTGATCGGAGATTCGGCCGAGAGCGTCGAGAAAACATCGGCGGCGATTGATATTCTGAAGCAAGTTGGCGCTTATCCTGATGCAGAGAAGGCGAAAGACAGCCATGGTATTCGTCCCGGAAAGGGTAAGATGAGGAACCGCCGCTACATTTCAAGGAAGGGTCCGTTGATCGTCTACGGCACGGAGGGTGCGAAGCTTGTAAAGGCTTTCCGGAACATTCCTGGGGTTGAGGTTGCTAACGTCGAGCGGCTCAATCTTCTGAAACTCGCTCCCGGTGGCCATCTTGGAAGGTTCATTATCTGGACCAAATCGGCAATTGAGAAGGTGGATTCAATCTATGGATCCTTTGATAAGACATCGGAGAAGAAGAAGGGATACCTCCTGCCACGCGCAAAGATGGTAAATGCTGATTTGGCTAGGATCATCAACTCGGACGAGGTTCAGTCTGTGGTGAGGCCAATCAAGAAGGAGGTGAAGAGGGCACCAATGAAGAAGAACCCGCTCAAGAACTTGAATACAATGTTGAAGCTGAATCCATATGCCAAGACTGCAAGGAGGATGGCTCTTCTGGCCGAGGCACAACGGGTCAAGGCCAAGAAGGAGAAGCTTGACAAGAAAAGGGCACAAATTCCTAAGGAAGAGGCAGCGGCTATCAAAGCTGCAGGCAAGGCCTGGTACCAGACAATGATCTCAGATAGCGACTACACGGAATTTGACAACTTCTCAAAGTGGCTTGGTGTCTCACAGTAA 1218 0.5534 MAAAARPLVTVQVLKSDMATDGGNAVPLPDVMKASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVMARGHRIESVPELPLVIGDSAESVEKTSAAIDILKQVGAYPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFIIWTKSAIEKVDSIYGSFDKTSEKKKGYLLPRAKMVNADLARIINSDEVQSVVRPIKKEVKRAPMKKNPLKNLNTMLKLNPYAKTARRMALLAEAQRVKAKKEKLDKKRAQIPKEEAAAIKAAGKAWYQTMISDSDYTEFDNFSKWLGVSQ* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0040 405 SUPERFAMILY Ribosomal protein L4 22 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vvi6g0040 405 Pfam Ribosomal protein L4/L1 family 26 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Vvi6g0040 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Vvi6g0040 405 PANTHER 60S RIBOSOMAL PROTEIN L4 4 398 IPR045240 -
Vvi6g0040 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Vvi6g0040 405 Coils Coil 342 362 - -
Vvi6g0040 405 MobiDBLite consensus disorder prediction 54 73 - -
Vvi6g0040 405 FunFam 60S ribosomal protein L4 3 308 - -
Vvi6g0040 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vvi6g0040 405 MobiDBLite consensus disorder prediction 54 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0040 Vvi-Chr6 490430 492529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0040 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.178 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0040 K02930 - vvi:100251826 780.015