Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0025 ATGCAGACAAATCAACAACCCCACTTCACACTGCCCTCTCTCTTTCTCTCTCTTTCTGTTGCTGAGAAGCCAAAAGACACTTTCCTTCTCTCTTTCTCCTTTTTAAGTTTTCCTGGGAGGTGGGCTGGAGAGAGTTTTGAGAGAACTAGTGAGGAGCTAGCAGCCATGAATGAAGCTTCTCATCTTACCAGAGATGCCTCCATGGAAGCTTTTGAGGAATTCAGGGAAGGGCAGGAGACAGAAAGATCAAGCTACAGATTGGTGTTACCAGCAGATGGATATGAATGGAAAAAGTATGGCCAGAAGTTCATAAAAAACATTGGCAAGTTCAGAAGCTATTTCAAGTGCCAAAGGACAGGTTGTGGGGCAAAGAAGAAGGCAGAGTGGACTCCCACAGAGCCCAGTGACATTAAAGTTAAATATGATGGAAAGCACACCCATGACTCTTGGGCATACTCAGTCCAATCAGAAGGGAATTCCACTGCTAGCACAGCCACCAACCAGTATAACTTGTTCACACAGGTGTTTGGAGATCAAGACTCTTCCATTAGGCATCATGATACCAATTGA 570 0.4474 MQTNQQPHFTLPSLFLSLSVAEKPKDTFLLSFSFLSFPGRWAGESFERTSEELAAMNEASHLTRDASMEAFEEFREGQETERSSYRLVLPADGYEWKKYGQKFIKNIGKFRSYFKCQRTGCGAKKKAEWTPTEPSDIKVKYDGKHTHDSWAYSVQSEGNSTASTATNQYNLFTQVFGDQDSSIRHHDTN* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0025 189 Pfam WRKY DNA -binding domain 92 148 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g0025 189 Gene3D WRKY domain 77 149 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi6g0025 189 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 89 164 IPR044810 GO:0003700
Vvi6g0025 189 ProSiteProfiles WRKY domain profile. 85 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g0025 189 SMART WRKY_cls 90 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi6g0025 189 SUPERFAMILY WRKY DNA-binding domain 86 149 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0025 Vvi-Chr6 364396 366438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0025 92 147 WRKY Transcription Factor Family AT5G49520 50.000 8.54e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi6g0025 WRKY 2.2e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0025 - - vri:117915929 333.183