Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0024 ATGGGAAATTGTTGGTGTAGGTGGAAACCTTCAATTTACAGAGTCTCATCTAATGCAAAGTCAGAGTCACCAAAGGATCAGAGCCCATCGGTGAAACCAATGAAGGACATTAGAAAGTTACCGTCAAATCCTGAAGAAGTAGAGGACCTGCGTCGTGATTCAGCGGCAAATCCATTGATCGTGTTCACATTCAATGAACTCAAGCAAATTACTGGAAATTTTAGACAAGATTATGTGTTGGGTGGAGGAGGATTTGGAAGTGTTTATAAAGGGTTTGTTACAGAGGATCTAATGGAGGGGCTTCAGCCCCTCCCTGTAGCCGTTAAAGTTCATGATGGCGACAACAGTTTTCAAGGCCACAGAGAATGGCTGGCTGAAGTCATATTCTTGGGGCAGCTTTCCCATCCAAATTTGGTGAAACTCATTGGATACGGCTGCGAGGATGAACATCGGGTATTAGTATATGAGTACATGGCTCGTGGTAGTGTGGAAAACAATCTATTCTCGAGAGTACTGCTTCCTCTTTCATGGTACATTAGGATGAAGATTGCATTTGGTGCTGCAAAAGGGCTTGCCTTTCTGCATGACGCTGAGAAACCTGTCATCTATCGTGATTTTAAGACATCTAACATTTTGTTAGACCTGGACTACAATCCAAAGCTCTCTGACTTTGGCCTTGCAAAAGACGGACCAGAGGGTGATAAATCTCACGTCTCTACTCGCATAATGGGAACATATGGTTATGCAGCACCTGAGTATATCATGACTGGCCATCTGAGTCCTAGAAGTGATGTTTACAGCTTTGGGGTTGTTCTCTTAGAACTTCTCACAGGGAGGAAATCTCTAGACAAGTCCAGACCAGCCCGAGAACAGAACCTTACAGACTGGGCTCTCCCATTGCTTAGAGAGAAGAAGAAATTGCTCAACATCATAGACCCAAGATTAGAAGGAGACTATCCTGTGAAAGGAGTTCACAAGGCAGCCATGCTAGCTTATCATTGCCTGAACCGGAACCCAAAAGCAAGGCCTCTCATGCGAGACATAGTAGATTCCTTGGAGCCTCTTCAGGTTGCCACTGATGTTTCCCCTGACAAACAGACTTTTACTGTGATTACTAATGAGGTTCCAAATGCAGCAGTGTAA 1143 0.4436 MGNCWCRWKPSIYRVSSNAKSESPKDQSPSVKPMKDIRKLPSNPEEVEDLRRDSAANPLIVFTFNELKQITGNFRQDYVLGGGGFGSVYKGFVTEDLMEGLQPLPVAVKVHDGDNSFQGHREWLAEVIFLGQLSHPNLVKLIGYGCEDEHRVLVYEYMARGSVENNLFSRVLLPLSWYIRMKIAFGAAKGLAFLHDAEKPVIYRDFKTSNILLDLDYNPKLSDFGLAKDGPEGDKSHVSTRIMGTYGYAAPEYIMTGHLSPRSDVYSFGVVLLELLTGRKSLDKSRPAREQNLTDWALPLLREKKKLLNIIDPRLEGDYPVKGVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQVATDVSPDKQTFTVITNEVPNAAV* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0024 380 Gene3D Transferase(Phosphotransferase) domain 1 158 374 - -
Vvi6g0024 380 FunFam Serine/threonine-protein kinase BIK1 41 157 - -
Vvi6g0024 380 MobiDBLite consensus disorder prediction 29 49 - -
Vvi6g0024 380 MobiDBLite consensus disorder prediction 16 49 - -
Vvi6g0024 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vvi6g0024 380 ProSitePatterns Protein kinases ATP-binding region signature. 80 109 IPR017441 GO:0005524
Vvi6g0024 380 ProSiteProfiles Protein kinase domain profile. 74 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g0024 380 Gene3D Phosphorylase Kinase; domain 1 39 157 - -
Vvi6g0024 380 Pfam Protein tyrosine and serine/threonine kinase 78 352 IPR001245 GO:0004672|GO:0006468
Vvi6g0024 380 FunFam Probable serine/threonine-protein kinase PBL8 158 371 - -
Vvi6g0024 380 PANTHER OS01G0588500 PROTEIN-RELATED 30 356 - -
Vvi6g0024 380 SUPERFAMILY Protein kinase-like (PK-like) 57 359 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0024 Vvi-Chr6 355996 359655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0024 41 362 Glycoside Hydrolase AT3G07070 49.096 2.77e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi6g0024 PK_Tyr_Ser-Thr 9.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0024 - - vvi:100258679 769.615