Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0014 ATGGAGGACGCAATGGGAGGAAGATACTGGTGCCATAGTTGCTCACAAGTGGTGAATCCCATCGCTGAAGCAGAGCCCAAGTGCCCCTTGTGTCAAGATGGATTCATTGAGGACATCGATGGCACTGCTTCAAGGGATCATAATGACTCCGACTCTGATCTAGCTTCCGATCGAACCCTCTCTCTTTGGGCCCCAATCTTGTTGGGCATGATGGGTAATCCTCGTCGGCGCCGCAGATTCAGAAGAGAAGATATAGAAGATGAGGAGGAGGACAATGAAGATGGTGAGGGTCGTAGAGGAGGAGAGACTGAACTTGATCGGGAACTTGATTCCATAATCAGGAGGAGAAGGAGAAGTTCTGCTACTATTCTCCAACTACTTCAAGGCATTAGAGCTGGAATGGTCTCTGAATCAGAGAATTCTGAAAATGATAGGGATAGGGATAGGGATAGAGAAAGAGAAAGGGAAAGAGAGCGCCTGATTCTAATAAATCCTTTCAATCAAACTATAATTGTTCAGGGTTCTTTTGATTCAAACCAGGCCCAAAATCAGAATCAAAACACCATTGGCTCCCTGGGGGACTATTTCATTGGCCCCAGTTTAGATTTGTTGCTGCAACATTTAGCAGAAAATGATCCTAATAGATATGGGACACCACCGGCGCAAAAAGATGCAATTGAAGCAATGCCCACTGTGAAAATTAAGGAGAATTTGCAGTGTTCAGTGTGTTTGGATGACTTTGAGATTGGCGCTGAGGCAAGGGAGATGCCATGTAAGCATAAATTCCACAGTGGGTGTATTCTGCCATGGCTGGAGCTTCATAGCTCTTGTCCAGTCTGCAGGTTTCAGATAGCAGCTGATGAATCCAAGCTTGATTCAGATGCTTCTCCGAATGTTAGCAGTAACAGTAGCGAGAGGAGTAACAATGGCCATGGTAGCAGTGAAGAGGGAGATGGGGATGGGAGAAGTGGAAATGGCAGAAGGTCTACGTTCAGGTGGCCTTTTACCAGTTTATTTTCTTCCCAAGGATCACAAACTAGCAATGGGAATTCCTCATCATCAGGAGCAAATGCACCAGGGAGTGCATCTAGGGCGAATGAGAATTGA 1107 0.4598 MEDAMGGRYWCHSCSQVVNPIAEAEPKCPLCQDGFIEDIDGTASRDHNDSDSDLASDRTLSLWAPILLGMMGNPRRRRRFRREDIEDEEEDNEDGEGRRGGETELDRELDSIIRRRRRSSATILQLLQGIRAGMVSESENSENDRDRDRDRERERERERLILINPFNQTIIVQGSFDSNQAQNQNQNTIGSLGDYFIGPSLDLLLQHLAENDPNRYGTPPAQKDAIEAMPTVKIKENLQCSVCLDDFEIGAEAREMPCKHKFHSGCILPWLELHSSCPVCRFQIAADESKLDSDASPNVSSNSSERSNNGHGSSEEGDGDGRSGNGRRSTFRWPFTSLFSSQGSQTSNGNSSSSGANAPGSASRANEN* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0014 368 MobiDBLite consensus disorder prediction 134 153 - -
Vvi6g0014 368 MobiDBLite consensus disorder prediction 311 325 - -
Vvi6g0014 368 MobiDBLite consensus disorder prediction 79 104 - -
Vvi6g0014 368 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Vvi6g0014 368 ProSiteProfiles Zinc finger RING-type profile. 240 281 IPR001841 -
Vvi6g0014 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 138 284 - -
Vvi6g0014 368 MobiDBLite consensus disorder prediction 329 368 - -
Vvi6g0014 368 SMART ring_2 240 280 IPR001841 -
Vvi6g0014 368 MobiDBLite consensus disorder prediction 291 368 - -
Vvi6g0014 368 FunFam E3 ubiquitin-protein ligase RING1-like 207 287 - -
Vvi6g0014 368 Pfam Ring finger domain 239 281 IPR001841 -
Vvi6g0014 368 CDD RING-H2_RNF126-like 239 281 - -
Vvi6g0014 368 MobiDBLite consensus disorder prediction 138 153 - -
Vvi6g0014 368 MobiDBLite consensus disorder prediction 293 310 - -
Vvi6g0014 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 287 IPR013083 -
Vvi6g0014 368 SUPERFAMILY RING/U-box 229 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0014 Vvi-Chr6 258161 259267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0014 102 287 C3H Transcription Factor Family AT1G26800 35.789 1.14e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0014 K11982 - vvi:100250148 533.487