Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g0002 ATGAAGAGGGAGAGAGATGCAGAGGCGGAGTTGAATCTTCCCCCCGGATTCCGGTTCCATCCCACAGATGAAGAGCTTGTTGTTCATTACCTTTGCCGCAAGGCCAGCTACCAGACTCTACCGGTTCCAATTATTGTTGAGATTGACCTTTATAAATATGATCCTTGGCAGCTTCCTGAGAAGGCGCTGTTCGGAATCAAGGAATGGTACTTCTTTACACCTCGGGACAGGAAGTACCCGAATGGGTCGAGACCTAACAGAGCCGCAGGCAATGGATACTGGAAAGCAACTGGCGCTGATAAACCCGTTAGACCAACGGGAAGCACAAAAGCTGTTGGAATAAAGAAAGCGCTGGTTTTCTACTCTGGAAAAGCTCCTAAAGGAACCAAGACTGATTGGATTATGCATGAGTACAGGCTTGCCCAACCAAATCGTTCATCTGATAAAAAGAGCAGTTTAAGGTTGGACGACTGGGTTCTTTGCCGGATCTACAACAAAAAGAACAATTGGAGGGAGAAGATGCAACACCAAATGAACCAACTATTACCTCATGAACCTATTGATCCCTTTGAGGTGGCTGAAGACGATGGGTCAGACAGTCTGAGGACCCCTGAATCAGATATTGACATTGAGACTCTTTCTTACAATCACGATCTACATGGTGCCCAGGGGCAGGGCTATTCATATCAAGTGCTACATGATAACAATTTGCAAATTACTGATACTGACAGCGGTTTCCCCGCACGAGAATGCTTCAAAGAAGAAGATGACTACTGGTTAACAAACTTGAATCTGGAAGATCTGCAGAATTCCCTTACAACCTTTGGAACAATGCCCTTACCAGATTTCAGTTATCAGGATTCTTTTTCAATGATCCATGGTTTACCATACTAA 894 0.4485 MKRERDAEAELNLPPGFRFHPTDEELVVHYLCRKASYQTLPVPIIVEIDLYKYDPWQLPEKALFGIKEWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVRPTGSTKAVGIKKALVFYSGKAPKGTKTDWIMHEYRLAQPNRSSDKKSSLRLDDWVLCRIYNKKNNWREKMQHQMNQLLPHEPIDPFEVAEDDGSDSLRTPESDIDIETLSYNHDLHGAQGQGYSYQVLHDNNLQITDTDSGFPARECFKEEDDYWLTNLNLEDLQNSLTTFGTMPLPDFSYQDSFSMIHGLPY* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g0002 297 PANTHER NAC TRANSCRIPTION FACTOR 56 13 202 - -
Vvi6g0002 297 Gene3D NAC domain 22 172 IPR036093 GO:0003677|GO:0006355
Vvi6g0002 297 SUPERFAMILY NAC domain 9 166 IPR036093 GO:0003677|GO:0006355
Vvi6g0002 297 Pfam No apical meristem (NAM) protein 14 140 IPR003441 GO:0003677|GO:0006355
Vvi6g0002 297 ProSiteProfiles NAC domain profile. 13 166 IPR003441 GO:0003677|GO:0006355
Vvi6g0002 297 MobiDBLite consensus disorder prediction 81 108 - -
Vvi6g0002 297 FunFam NAC transcription factor 22 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi6g0002 Vvi-Chr6 96179 97288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi6g0002 9 205 NAC Transcription Factor Family AT1G77450 64.824 3.07e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi6g0002 NAM 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g0002 - - vvi:100263939 629.017