Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1663 ATGCGTGGAGTGTACAAAACATTAAGGGCTGCAGGGGAGAGACACAGCCAGCTCACAGAGAACATCATTGGGTTTGGAAAGACGGGAACTATGTACAAAGCAGCAGTCATGAATGGCTGTTTGCCAGCAGTTAAGAGGTTCCTAGACTCCCAGCAATTTGAGAAGCAGTTTATATATGAGATACTAATCCTGGGGAGACTAACTCATCCCAACTTGGTACCCTTATTGGGATTCTGCATCGAGAGAAATGAGAAGCTTTTGGTGTATGAACATATGGGAAATGGGAACCTTTATCAATGGTTACACCCCAACAAAGCCAAGGCCAAGATCTTGGAATGGCCTTTGAGGGGTAGAATTGGAGTTGGGCTAGCTAGAGGTTTGGCATGGCTGCACCATAACTGTATGTTCTTGGTAGGTCATGGCAATATTAACTCAAAATGCATCTTACTAGATCAGAATTTTGAGCCCCAAATTTCGAATTTTGGAGGGGCAACACTCATGAAGTCGAGCATCACTGATTCTACCTGGGGTTTGTTTGTGGGTTCTGCAGATACTGAGAATAAGCGTGTGCAATGCCCTCTAAAGAAAGATGTCTACAGCTTTGGAATTGTGCTCCTTGAGATGGTGACAAGGAAGAAACCTCACAAAATTTCAGATGCTTCTCGAAGGTTTGATGGGACTTTAGTTGATTGGATCAACCATCTTTTGAGTACTTCTGGCCTCTATGATGCCATTGATAAATCTTTAATCGGACAAGGATTTGACGGCGAGATCTTTGAGTTCCTTAAAGTTGCATGTAGTTGTGTCAAGGCCTCTCCCCATCGAAGGCCAACAATGCTAGAAGTTGATAAAATACTAAGAAATACAGTAGGAAGACACCAAATTGATGATGATTCTGAGTCATGGACACAAAATGAATGCGGGACCTCTAACGATAGAGATGAGTATACAGCGGTTGAAATAATGGAGGAATCCATTGAAATTGTGCAAGTAGACATAGCTCATTCATGA 1011 0.4263 MRGVYKTLRAAGERHSQLTENIIGFGKTGTMYKAAVMNGCLPAVKRFLDSQQFEKQFIYEILILGRLTHPNLVPLLGFCIERNEKLLVYEHMGNGNLYQWLHPNKAKAKILEWPLRGRIGVGLARGLAWLHHNCMFLVGHGNINSKCILLDQNFEPQISNFGGATLMKSSITDSTWGLFVGSADTENKRVQCPLKKDVYSFGIVLLEMVTRKKPHKISDASRRFDGTLVDWINHLLSTSGLYDAIDKSLIGQGFDGEIFEFLKVACSCVKASPHRRPTMLEVDKILRNTVGRHQIDDDSESWTQNECGTSNDRDEYTAVEIMEESIEIVQVDIAHS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1663 336 SUPERFAMILY Protein kinase-like (PK-like) 19 286 IPR011009 -
Vvi5g1663 336 Pfam Protein kinase domain 20 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1663 336 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Vvi5g1663 336 ProSiteProfiles Protein kinase domain profile. 17 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1663 336 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 307 - -
Vvi5g1663 336 Gene3D Transferase(Phosphotransferase) domain 1 92 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1663 Vvi-Chr5 24541244 24543738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1663 21 297 Receptor kinase-like Gene Family AT1G27190 44.170 2.76e-71 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vvi5g1663 Pkinase 2.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1663 - - vvi:100249031 653.284