Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1648 ATGGCCCTGGTGAGAGCTCGCGCGGCTTCGTCAACTCTCTTGAAGAGGCTTCTCTTCCCCTCCGTTGCCAACCCTAGTCATCGCAATCTCTCCTCTGTTGCAAAGGATTCGCCTCATGATGCTTTCCGCGAGAGCATGATGAACCAGATGTTCAGTCTGGACATAAATTCCCAAATTGGAAGTTGCATGCCACTTGCAGCAATGAGAATTGGAACTATAATCCATAACATTGAGATAAACCCGGGTCAAGGTGGAAAACTTGTGCGAGCAGCTGGAACATCTGCAAAGCTACTGAAAGAGCCAACATCAAGATACGTTTTAGTGAGAATGCCTTCTGGTGTCCAGAAACTGATCGATACAAGATGTCGAGCCACTATTGGCACTGTTTCAAACCCGGGTCATGGGGCTAAGAAGCTTAGGAAAGCTGGGCAGAGCCGGTGGTTGGGTAGAAGGCCGGTGGTTCGTGGTGTAGCGATGAATCCTGTAGATCATCCTCATGGAGGAGGAGAGGGGCGAAGCAAAAGTGGTGGGAGCCATGGGAGGGGTTCCTTAACACCATGGGGCAAGCCAACAAAGTGTGGGTACAAAACTGGACCACTCAAGCGCAGAAAGTAG 615 0.5041 MALVRARAASSTLLKRLLFPSVANPSHRNLSSVAKDSPHDAFRESMMNQMFSLDINSQIGSCMPLAAMRIGTIIHNIEINPGQGGKLVRAAGTSAKLLKEPTSRYVLVRMPSGVQKLIDTRCRATIGTVSNPGHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSGGSHGRGSLTPWGKPTKCGYKTGPLKRRK* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1648 204 MobiDBLite consensus disorder prediction 158 204 - -
Vvi5g1648 204 Gene3D Ribosomal protein L2, domain 3 130 204 IPR014726 -
Vvi5g1648 204 PANTHER RIBOSOMAL PROTEIN L2 43 202 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vvi5g1648 204 FunFam 60S ribosomal protein L2, mitochondrial 53 129 - -
Vvi5g1648 204 Pfam Ribosomal Proteins L2, C-terminal domain 58 188 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vvi5g1648 204 ProSitePatterns Ribosomal protein L2 signature. 152 163 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vvi5g1648 204 Gene3D - 48 129 IPR014722 -
Vvi5g1648 204 NCBIfam 50S ribosomal protein L2 54 201 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vvi5g1648 204 FunFam 50S ribosomal protein L2 130 204 - -
Vvi5g1648 204 SUPERFAMILY Translation proteins SH3-like domain 59 196 IPR008991 -
Vvi5g1648 204 SMART Ribosomal_L2_C_2 57 190 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1648 Vvi-Chr5 24442173 24443562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1648 56 169 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.333 4.08e-23 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1648 - - vvi:100266379 397.127