LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi5g1645	ATGGAGATTGCGGCTCAGCTGAAGCGAGGCATCTCGCGCCAGTTCTCCACTGGATCGCTGCTGAGGACCCTGAGCCGGCAGTTCTCGCGGCAGTCGTCGCTGGATCCGCGGAGGACCAATCTGAGGTTCAGCCTCGGGAGGCAATCGTCGCTGGATCCGATTCGGCGGAGCCCGGTGAATGAGGAGCTATCGGTGCCGGAGAATCTGGATTCCACCATGCAGATGCTGTTTATGGCGTGTAGAGGGGATGTGAAGGGAGTGGAGGATTTGTTGAACGAAGGCACTGATGTGAACAGCATCGATTTGGATGGCCGCACTGCTCTGCATATCGCGGCCTGTGAAGGTCAGATTGAGGTAGTTAAGCTCCTGCTCAGTCGGAAGGCCAACATCGATGCTCGTGACCGTTGGGGGAGTACGGCAGCTGCTGATGCTAAATACTATGGAAATGTAGAAATTTATAATATTTTGAAGGCTCGGGGAGCCAAAACTCCGAAAATCAGGAAGACGCCAATGGCTGTTGCAAATCCTCGAGAAGTTCCAGAGTATGAGCTTAATCCATTAGAGCTTCAGGTCCGCAAAAGTGATGGTATCACAAAGGGATCATACCAAGTAGCTAAATGGAATGGTACAAAGGTTTCTGTAAAGATACTTGATAAGGACAGCTATTCAGACCCCGATAGCATAAATGCTTTCAAATATGAGCTAACCTTATTAGAAAAGGTCCGGCATCCAAATGTGGTTCAGTTTGTTGGAGCTGTTACCCAAAATATACCCATGATGATTGTTTCAGAGTATCATCCGAAAGGTGACCTGGGAAGCTATCTTCAAAAGAAAGGGCGTCTATCTCTATCTAAAGCTCTAAGATATGCTCTTGATATTGCCAGGGGCATGAATTATCTACATGAATGCAAACCAGACCCAGTTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAGTGGAGGTCAGTTGAAGGTTGCCGGATTTGGTTTATTAAGGCTGTCAAAGATGTCACCTGACAAAGTAAAATTAGCGCAATCAGGGAGTCACATTGATGCTTCAAATGTATATATGGCACCTGAGGTTTATAGAGATGAACTATTTGACAGAAGTGTGGATTCATTCTCTTTCGGTCTCATACTTTATGAGATGATTGAAGGAGTACAGCCCTTTCACCCAAAACCTCCAGAAGAAGCCATCAAAATGATCTGTTTAGAAGGAAAGAGACCACCTTTCAAGAGCAAATCAAGAAGTTATCCTCCAGATTTAAAAGAGTCCTAG	1287	0.4577	MEIAAQLKRGISRQFSTGSLLRTLSRQFSRQSSLDPRRTNLRFSLGRQSSLDPIRRSPVNEELSVPENLDSTMQMLFMACRGDVKGVEDLLNEGTDVNSIDLDGRTALHIAACEGQIEVVKLLLSRKANIDARDRWGSTAAADAKYYGNVEIYNILKARGAKTPKIRKTPMAVANPREVPEYELNPLELQVRKSDGITKGSYQVAKWNGTKVSVKILDKDSYSDPDSINAFKYELTLLEKVRHPNVVQFVGAVTQNIPMMIVSEYHPKGDLGSYLQKKGRLSLSKALRYALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKVAGFGLLRLSKMSPDKVKLAQSGSHIDASNVYMAPEVYRDELFDRSVDSFSFGLILYEMIEGVQPFHPKPPEEAIKMICLEGKRPPFKSKSRSYPPDLKES*	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi5g1645	428	SUPERFAMILY	Protein kinase-like (PK-like)	203	414	IPR011009	-
	Vvi5g1645	428	ProSiteProfiles	Ankyrin repeat region circular profile.	103	135	-	-
	Vvi5g1645	428	Pfam	Ankyrin repeats (3 copies)	77	161	IPR002110	GO:0005515
	Vvi5g1645	428	FunFam	Integrin-linked protein kinase 1	46	182	-	-
	Vvi5g1645	428	SUPERFAMILY	Ankyrin repeat	74	168	IPR036770	-
	Vvi5g1645	428	ProSiteProfiles	Protein kinase domain profile.	187	428	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g1645	428	Gene3D	Transferase(Phosphotransferase) domain 1	267	427	-	-
	Vvi5g1645	428	SMART	serkin_6	191	427	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g1645	428	PIRSF	ILK	7	428	-	-
	Vvi5g1645	428	Gene3D	Phosphorylase Kinase; domain 1	187	266	-	-
	Vvi5g1645	428	ProSiteProfiles	Ankyrin repeat profile.	103	135	IPR002110	GO:0005515
	Vvi5g1645	428	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	308	320	IPR008271	GO:0004672\|GO:0006468
	Vvi5g1645	428	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	145	426	-	-
	Vvi5g1645	428	Pfam	Protein tyrosine and serine/threonine kinase	198	415	IPR001245	GO:0004672\|GO:0006468
	Vvi5g1645	428	Gene3D	-	54	172	IPR036770	-
	Vvi5g1645	428	FunFam	serine/threonine-protein kinase STY46-like	184	267	-	-
	Vvi5g1645	428	SMART	ANK_2a	71	99	IPR002110	GO:0005515
	Vvi5g1645	428	SMART	ANK_2a	103	132	IPR002110	GO:0005515
	Vvi5g1645	428	SMART	ANK_2a	136	166	IPR002110	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi5g1645	Vvi-Chr5	24410488	24418069	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi5g1645	3	427	MAP Kinase Kinase Kinase	AT2G31800	79.206	0.0	729

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-5	Vvi5g1645		PK_Tyr_Ser-Thr	2.3e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi5g1645	-		-	vvi:100244046	848.966