Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1631 ATGGCTTCACCAGATCTTGTTTCTTCCTTACCATGCTCAACTGGTGAATCCTTCAGTGGATCATTCAATATAGCCATAGAAGAAACAAGTCCAGCCAATTTTTTACCAGTGCTGGAAGTTTCCAACTCGTCTGTGTGCAATAACAGTAACATCCCCAAACCACCTCCACTCCCTGGTAAAACCTATACGAAAACAAGTTATCCCAAAAGGCTTGCGAACTGTAGTTCTGTCCCAAGAGAAACAAAAGATACATGGGACAAGCTCTTTAAGGACGGATATGGAGCAGATATTCATATTATCACAGAAGATGGCCCTATTATTCCAGCTCATTCTTGTGTTCTGGGTGTAGCATCACCAGTACTGGGGAATTTTCTACAGCTATCAAAAGTTAAGAAGGGAATAAGATACATTAAGATTCCTGGGGTACCTTGTGAAGCTGCATATGCTTTTATTCGGTTCCTTTACTCATCCAGCTTTGAAGAGGAAGAAATGAAGAAATTTGTTCTCCACTTGTTGGTTTTATCACACTCCTATTCAGTTCCATCTCTGAAAAGGCTTTGTGCACACCATCTGGAGCAAGGATGGATGACACCTGAAAACCTCATAGATGTGCTTCAGTTAGCTAGGAAGTGTGATGCACCCCGTCTTTCCCTCATCTGCACCCGCATGATTGTGAAGGATTTCAAAACTATATCTTCAACCCAAGGATGGAAAGTAATGAAGCGTGTAGATCCTGCACTTGAACAAGAGCTGCTGGAGGCAGTTGTTGAAGCTGATTCCAGGAAAGAGGAGAGATTGAAGAAGATAGAAGAGAAAAAGGTGTACTTGCAACTGCACGAGGCCATGGAGGCCCTCCTTCACATATGCAGAGACGGATGCAGGACGATTGGGCCTCGTGACAAGGTACTGAAAGGAAGCCAGGTTGCTTGTGGCTTCCCAGCCTGCAAAGGGCTTGAGACTTTAGTCCGCCATTTCTCCAGCTGCAAGACCCGAGTCCCCGGCGGATGTGTTCACTGCAAGCGCATGTGGCAGCTTCTTGAACTGCACTCCCGGATGTGCAGTGAACCTGATTGTTGCAAGGTCCCTCTCTGTAGGCATTTCAAGGAAAAGATGCAGCAACAGAGTAAGAAAGACGAGACAAAATGGAAACTATTGGTTAGCAAAGTGATAGCAGTGAAGAATTCACTGGGGCCATTCCCAGCTCGCAGCTCAGGTTTACTATGA 1224 0.4534 MASPDLVSSLPCSTGESFSGSFNIAIEETSPANFLPVLEVSNSSVCNNSNIPKPPPLPGKTYTKTSYPKRLANCSSVPRETKDTWDKLFKDGYGADIHIITEDGPIIPAHSCVLGVASPVLGNFLQLSKVKKGIRYIKIPGVPCEAAYAFIRFLYSSSFEEEEMKKFVLHLLVLSHSYSVPSLKRLCAHHLEQGWMTPENLIDVLQLARKCDAPRLSLICTRMIVKDFKTISSTQGWKVMKRVDPALEQELLEAVVEADSRKEERLKKIEEKKVYLQLHEAMEALLHICRDGCRTIGPRDKVLKGSQVACGFPACKGLETLVRHFSSCKTRVPGGCVHCKRMWQLLELHSRMCSEPDCCKVPLCRHFKEKMQQQSKKDETKWKLLVSKVIAVKNSLGPFPARSSGLL* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1631 407 Pfam BTB/POZ domain 87 193 IPR000210 GO:0005515
Vvi5g1631 407 SUPERFAMILY TAZ domain 272 373 IPR035898 -
Vvi5g1631 407 SUPERFAMILY POZ domain 74 193 IPR011333 -
Vvi5g1631 407 SMART BTB_4 95 195 IPR000210 GO:0005515
Vvi5g1631 407 Gene3D TAZ domain 271 393 IPR035898 -
Vvi5g1631 407 SMART TAZ_2 272 365 IPR000197 -
Vvi5g1631 407 Coils Coil 252 272 - -
Vvi5g1631 407 CDD BACK 197 257 - -
Vvi5g1631 407 ProSiteProfiles BTB domain profile. 95 163 IPR000210 GO:0005515
Vvi5g1631 407 FunFam BTB/POZ and TAZ domain-containing protein 2 197 267 - -
Vvi5g1631 407 Pfam TAZ zinc finger 279 364 IPR000197 -
Vvi5g1631 407 ProSiteProfiles Zinc finger TAZ-type profile. 269 367 IPR000197 -
Vvi5g1631 407 FunFam BTB/POZ and TAZ domain-containing protein 2 269 394 - -
Vvi5g1631 407 Gene3D Potassium Channel Kv1.1; Chain A 73 194 IPR011333 -
Vvi5g1631 407 Gene3D - 196 270 - -
Vvi5g1631 407 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 54 396 IPR044513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1631 Vvi-Chr5 24277184 24279902 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vvi5g1631 BTB 4.9e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1631 - - vvi:100254312 795.808