Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1628 ATGCCTACAATTTTTTTCTTTGTTTTTCTGTTTTGTTTGTCAACCGATTTACGTCCAGCTGCCGCGGCTGACTATCACCTGCAGACGCGGCGGATTCTTCATCAACCCTTGTTTCCTCTCAATTCGTTTCCCCCAACTCCGTCGCCAGCGTCTTCCCCTCAAGCACATCCTCAGCAGCAACCTAAGTTTCCGTTCTCATCCTCATCTTCGAATAAGCAGCCATTTTTTCCCGCGTACGCATCTCCGCCCCCGCCTCCGTCTTCGACGGCTTTGGCCACATTTCCAGCGAATATTTCCTCCCTTATTTTCCCGCAGTCGTCTTCCCGGAAGGGGGTTTCGCCGAAGCTAGTGGCTATAGCGGTGGGGGTGTCGCTTGCCGCCGTCGCGCTCATCGCCATCGCTGCCGTATTGCTCTACCACCGTCGCCAGCCTAAAAGAAAAGACCCGAGATCCGACAGCCTCCGCCTATACCCGGCTAACACCGCCGTCTCCGACGGCATCCAGCACCACAAACAGCCGCGCAGCAGCATCTCAGGCACGAGCTCCGAGTTCCTCTACCTTGGTACGCTGGTAAACTCTCGCGGCGTCGACGACGATGCCGCAGCAAACTCCAGCAATGCCGGAACAAAACGGAGCGCGTCGGCCTCGCCGCCGTACCAGAAGCTCAGTTCGCCGGAACTCCGCCCTCTTCCGCCGCTTCCACGGCAGAACTTCCGGCATAGCTTCAGAAACGCCGACGTGGGCTCCTTTGGTGACGACGACGAGGACGAAGAGTTCTTTTCTCCGAGAGGGTCTTCCAGTCCAGTGGGCGCCGGATCGAGTTCCCGAAGAACGTTCCCGATGGTAGAAGCCGAGAATTATCGAAGCAGAAGCGTGGATTCTAGAACTCCATCGTACCCATCTTCTAACTCAGCTTCTCCGACGAGCTCTACTTCCAATAGCCCTTCTCCGCCATTGAATTCAAGTCCCGAAATCTCAAAATCGAAATTGCCCGTTTCCAACAGTGCTTCCCCTCCATTGAATTCGAGTCCCGAAGTCTCGAAACCAAAATCCCCCACTGCCACCATCAACTTCCCTGCTCCTCCACCGCTGCGACCTCCCCCGCCGCTGCCACGGCGTTCAAGGACCCCCTCGCCGCCATCAGAGACAGAAGAATTGGGGCAAAGAATTTCGGATGTTTCTGGAGGATCTCCACAAAAATTTGAGGCTGTATCCACTGAAATTCCCATTGCCAAGCCACCACCACCGCCGCCTCCACCTCCCCCACCGCGATTTTGGGAAATTCCGGCGGACCCAACGCCTATTCACGAACCGAATTTCGGGCCACCGGCTCTTGTACCGCCTTCAAGGCCAGTGGTGTTCCAAAACCCGGGACTGGAAGCCCCATCTGAACAGCCTCAGGGCATTGAAGCTCTTGAAAGGAATGGCGAAACCCCGAAACCGAAGCTGAAACCCTTGCATTGGGACAAGGTCAGAGCGAGCTCAGATCGAGCAATGGTGTGGGATCAGATGAAATCAAGCTCTTTTCAATTGAATGAGGAAATGATCGAGACATTGTTTATGGTGAATGCTTCAAATTTGACTCCAAAGGATAATTTGCGGCGACAGATTCTTCCAACCCCGAATCAGGAGAATCGGGTTCTTGATCCAAAAAAGTCTCAGAACATCGCAATTTTGTTGAGGGCACTTAATGTGACCATTGATGAAGTCTGTGAAGCCCTTTTGGAAGGCAATACAGACACACTGGGAACAGAGCTTCTTGAAAGTCTGCTAAAGATGGCTCCAACAAAAGAGGAAGAATGTAAACTGAAAGAATTTAAAGATGAGTCACCGTTCAAGTTAGGTCCTGCTGAAAGATTTCTAAGGGCTGTGCTTGACATACCCTTTGCATTTAAAAGGGTTGATGCAATGCTTTACATAGCCAATTTTGATTCAGAAGTCGAGTATCTCAAAAGGTCTTTTGACACTCTAGAGGCTGCTTGCGAAGAACTGAGGAACAGCAGAATGTTCTTGAAGCTTCTTGAAGCTGTACTCAAGACTGGGAACCGAATGAATGTTGGGACCAACCGTGGCGATGCACATGCCTTCAAGCTCGACACGCTCCTCAAGCTTGTTGATATTAAGGGCACTGATGGGAAAACCACCCTTCTGCATTTTGTTGTACAGGAAATCATCAGGGCTGAAGGTTCTCGGCTGGCTGGTGCCAACCAGAAAACAATGGATGAAGTGACCCAGCAATCTGCTTTCCGGGATGATGTTGAATTTAGGAAGCTTGGCCTGCAAGTTGTTGCTGGGTTGAGTGGTGAGCTCACCAGCGTAAAGAAGGCTGCTGCCATGGATTCAGATGTGCTTAGTAATGAAGTTGCAAAACTTGCTAGAGGGATCACAAAAATCGGGGAAGTTGCAAGATTAAATGAAGAGATAGCACTGAAAGAGAGTAGCCGGAAATTCTGTGAGTCAATGAATGGGTTCTTAAAGAAGGCAGAGGAGGAGATTATAAAGATTCAAGCCCAAGAGAGTGCTGCACTCACCCTTGTCAAAGAAATAACTGAATATTTCCATGGGAACTCAGCTAAGGAAGAAGCTCACCCATTCAGAATTTTCATGGTGGTAAGGGATTTTCTTTCTATTCTTGATCAGGTTTGCAAGGAAGTTGGGAAAATCAACGAGCGAACCATAGTCAGTTCAGCTCGCCAATTTCCTATGCCTCTAAATCCAAGCACGCCACCAATTTTTCCTGGGTTCAACCAGAGGCCGCAATATGGTTCGTCTGATGATGAAAGCTCATCCTCGTCTTAG 2799 0.5038 MPTIFFFVFLFCLSTDLRPAAAADYHLQTRRILHQPLFPLNSFPPTPSPASSPQAHPQQQPKFPFSSSSSNKQPFFPAYASPPPPPSSTALATFPANISSLIFPQSSSRKGVSPKLVAIAVGVSLAAVALIAIAAVLLYHRRQPKRKDPRSDSLRLYPANTAVSDGIQHHKQPRSSISGTSSEFLYLGTLVNSRGVDDDAAANSSNAGTKRSASASPPYQKLSSPELRPLPPLPRQNFRHSFRNADVGSFGDDDEDEEFFSPRGSSSPVGAGSSSRRTFPMVEAENYRSRSVDSRTPSYPSSNSASPTSSTSNSPSPPLNSSPEISKSKLPVSNSASPPLNSSPEVSKPKSPTATINFPAPPPLRPPPPLPRRSRTPSPPSETEELGQRISDVSGGSPQKFEAVSTEIPIAKPPPPPPPPPPPRFWEIPADPTPIHEPNFGPPALVPPSRPVVFQNPGLEAPSEQPQGIEALERNGETPKPKLKPLHWDKVRASSDRAMVWDQMKSSSFQLNEEMIETLFMVNASNLTPKDNLRRQILPTPNQENRVLDPKKSQNIAILLRALNVTIDEVCEALLEGNTDTLGTELLESLLKMAPTKEEECKLKEFKDESPFKLGPAERFLRAVLDIPFAFKRVDAMLYIANFDSEVEYLKRSFDTLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGSRLAGANQKTMDEVTQQSAFRDDVEFRKLGLQVVAGLSGELTSVKKAAAMDSDVLSNEVAKLARGITKIGEVARLNEEIALKESSRKFCESMNGFLKKAEEEIIKIQAQESAALTLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLSILDQVCKEVGKINERTIVSSARQFPMPLNPSTPPIFPGFNQRPQYGSSDDESSSSS* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1628 932 Gene3D Formin, FH2 domain 471 889 IPR042201 -
Vvi5g1628 932 MobiDBLite consensus disorder prediction 355 376 - -
Vvi5g1628 932 ProSiteProfiles Formin homology-2 (FH2) domain profile. 473 904 IPR015425 -
Vvi5g1628 932 MobiDBLite consensus disorder prediction 380 401 - -
Vvi5g1628 932 MobiDBLite consensus disorder prediction 409 426 - -
Vvi5g1628 932 SMART it6_source 473 893 IPR015425 -
Vvi5g1628 932 MobiDBLite consensus disorder prediction 899 932 - -
Vvi5g1628 932 Pfam Formin Homology 2 Domain 477 878 IPR015425 -
Vvi5g1628 932 MobiDBLite consensus disorder prediction 55 71 - -
Vvi5g1628 932 MobiDBLite consensus disorder prediction 44 71 - -
Vvi5g1628 932 MobiDBLite consensus disorder prediction 200 221 - -
Vvi5g1628 932 PANTHER FORMIN-RELATED 5 925 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vvi5g1628 932 SUPERFAMILY Formin homology 2 domain (FH2 domain) 413 892 - -
Vvi5g1628 932 Coils Coil 647 667 - -
Vvi5g1628 932 MobiDBLite consensus disorder prediction 291 354 - -
Vvi5g1628 932 MobiDBLite consensus disorder prediction 200 426 - -
Vvi5g1628 932 MobiDBLite consensus disorder prediction 917 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1628 Vvi-Chr5 24261711 24266001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1628 442 920 FH2 protein (formin) Gene Family AT3G25500 70.661 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1628 - - vvi:100245626 1541.17