Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1626 ATGTCCGACGCGGTACCGCCGCCGGATCCGCATCACCAGCAGCAGCATGCCCCGGTGCCTGGGATGGAGAATATTCCGGCGACGCTTAGCCACGGCGGCAGATTCATCCAGTACAACATCTTCGGGAACATCTTCGAGGTCACGGCCAAATACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGCGAATGCATTCGATAACAAAATCGATGCGAAGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAACGTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAATGATGTTTACATTGCATATGAGCTAATGGATACTGACCTTCATCAAATCATTCGTTCCAATCAAGCACTTTCAGAAGAACACTGTCAGTATTTCCTCTATCAGATCCTCCGTGGGCTGAAATATATACATTCGGCAAATGTTCTTCACAGGGACTTAAAGCCTAGCAATCTCCTCCTGAATGCCAATTGTGATTTGAAAATATGTGATTTTGGGCTAGCTCGTGTCACCTCTGAAACTGATTTCATGACAGAATATGTTGTTACGAGATGGTACCGAGCTCCAGAGCTGTTGTTGAACTCTTCAGATTACACTGTGGCCATTGATGTATGGTCAGTAGGTTGCATTTTCATGGAATTGATGGATCGGAAGCCTTTGTTTCCTGGCAGAGATCATGTGCATCAGCTACGTTTGCTTATGGAGCTGATTGGCACCCCATCAGAGGCTGAGTTGGGGTTTTTGAATGAAAATGCAAAGAGATACATTCGGCAACTTCCTATTTACCGTCGGCAGACATTCACTGAAAAGTTCCCACAAGTTCACCCTGTAGCTATCGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTGATGAGCCTATATGCACGACTCCCTTCAGCTTCGATTTTGAGCAGCACGCACTGTCCGAAGAGCAGATGAAGGAGCTCATCTACCGAGAGGCACTCGCATTTAACCCCGAGTATCAGAACTATTGA 1158 0.4689 MSDAVPPPDPHHQQQHAPVPGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVALKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPQRTAFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTVAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEAELGFLNENAKRYIRQLPIYRRQTFTEKFPQVHPVAIDLVEKMLTFDPRQRITVEEALAHPYLTSLHDISDEPICTTPFSFDFEQHALSEEQMKELIYREALAFNPEYQNY* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1626 385 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
Vvi5g1626 385 FunFam Mitogen-activated protein kinase 37 146 - -
Vvi5g1626 385 ProSitePatterns MAP kinase signature. 87 190 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi5g1626 385 ProSiteProfiles Protein kinase domain profile. 52 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1626 385 Pfam Protein kinase domain 57 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1626 385 CDD STKc_TEY_MAPK 45 380 - -
Vvi5g1626 385 SMART serkin_6 52 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1626 385 Gene3D Phosphorylase Kinase; domain 1 35 374 - -
Vvi5g1626 385 MobiDBLite consensus disorder prediction 1 24 - -
Vvi5g1626 385 FunFam Mitogen-activated protein kinase 136 364 - -
Vvi5g1626 385 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 50 338 - -
Vvi5g1626 385 SUPERFAMILY Protein kinase-like (PK-like) 57 345 IPR011009 -
Vvi5g1626 385 Gene3D Transferase(Phosphotransferase) domain 1 136 364 - -
Vvi5g1626 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1626 Vvi-Chr5 24220499 24240921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1626 19 383 MAP Kinase Gene Family AT2G43790 92.329 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vvi5g1626 Pkinase 3.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1626 K14512 - vvi:100242320 773.081