Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1623 ATGGTCTTTGTCAAAGCTCAAAAGTCCAAGGCTTACTTCAAGAGGTACCAAGTTAAATTCAAGAGAAGGAGAGAGGGAAAGACTGACTACAGGGCTAGGATTCGCCTGATTAATCAAGACAAGAACAAGTATAACACTCCGAAATATCGCTTTGTTGTGCGATTTACTAACAAGGATATTATTGCCCAAATAACATCCGCTAGCATTGCTGGTGATATAGTCCTTGCTTCTGCATATTCTCATGAGCTACCTCACTATGGACTTGAAGTTGGTCTGACCAACTATGCTGCAGCTTACTGCACTGGGCTTCTCTTGGCTCGCCGTGTCTTGAAAATGCTTGAGATGGATGGTGAATATGAAGGCAATGTGGAGGCAACTGGTGAGGATTACTCTGTTGAACCCACAGATAGCAGGAGGCCATTCCGTGCCCTTCTTGATGTTGGGCTTGTGAGAACAACAACTGGCAACCGTGTTTTTGGTGCTCTGAAGGGAGCACTGGATGGTGGCTTGGACATTCCTCACAGTGACAAGAGATTTGCTGGATTCTCAAAGGATAGCAAGCAGCTTGATGCCGAGGTTCATCGAAAGTATATTTATGGTGGCCATGTTAGTGCATATATGGGGACTTTGATAGAAGATGAGCCAGAGAAGTACCAATCTCACTTCAGTGAATATATTAAGAAGGGAGTTGAGCCAGATGACATTGAGGAGATGTACAAGAAGGTTCATGCTGCCATCCGTGCAAACCCAATTCAAAAGAAGGTTGAGAAGCAGCCACCGAAAGAGCACAAGAGGTACAATTTGAAGAAGCTGACCTACGAGGAAAGGAAAGCTAAGTTGATTGAACGATTGAATGCTCTCAACTCAGCAGCTGCTGATGATGATGATGATGAGGATGATGAATGA 906 0.4437 MVFVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDIVLASAYSHELPHYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDGEYEGNVEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFSKDSKQLDAEVHRKYIYGGHVSAYMGTLIEDEPEKYQSHFSEYIKKGVEPDDIEEMYKKVHAAIRANPIQKKVEKQPPKEHKRYNLKKLTYEERKAKLIERLNALNSAAADDDDDEDDE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1623 301 Coils Coil 270 290 - -
Vvi5g1623 301 CDD Ribosomal_L18_L5e 41 170 - -
Vvi5g1623 301 SUPERFAMILY Translational machinery components 11 251 - -
Vvi5g1623 301 Gene3D - 1 291 - -
Vvi5g1623 301 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi5g1623 301 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi5g1623 301 FunFam Uncharacterized protein 149 291 - -
Vvi5g1623 301 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi5g1623 301 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi5g1623 301 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi5g1623 301 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi5g1623 301 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi5g1623 301 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi5g1623 301 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Vvi5g1623 301 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 291 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi5g1623 301 FunFam Uncharacterized protein 1 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1623 Vvi-Chr5 24202309 24206387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1623 1 292 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 85.959 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1623 K02932 - vvi:100262824 572.778