Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi5g1622 | ATGTCTTCTGCTCAGGATCCATTTTATATTGTGAAAGAGGAGATTCAAGAATCTATTGATAAATTGCTATCTACTTTTCACCAATGGGAACGCATTCCTGTGGAAACCGGAGAGCAAGTACATCTCACAAAGGAGCTGCTTGCTAGTTGTGAAAGCATTGAGTGGCAGGTAGATGAATTGGACAAAACAATTTCCGTAGCAGCAAAAGACCCTGCTTGGTATGGCATTGACGAAGTGGAACTTGATAAAAGGAGGCGATGGACCAGCACAGCTCATACCCAGGTGAGCAATGTGAAGAAATCAGTAGTAGCTGGAAAAGAATCAAATGGTACGGGCACAGCTAATGTGAATGGAATGCGCCGGGAAATGATGAGGATGTCAAATCCTCATCAGGCGGATAGATCTAATCAGTATGGCTCCCAAGATAATGATGATTTCATATCATCTGAATCAGATCGACAGTTGCTTCTCATAAGGCGACAGGATGAGGAGCTGGATGTGCTTAGTGCAAGTGTGGAAAGAATTGGAGGAGTTGGGCTTACCATACACGAAGAACTCCTTGCACAGGAGAAAATTATAGATGAATTGGGCAGTGAGATGGACAGTACTTCAAATCGGCTTGATTTTGTTCAGAAAAAGGTAGCTATGGTGATGAAGAAGGCGAGCGCCAAGGGCCAGATCATGATGATATTATTCTTGGTGGTTCTATTCATTGTCCTCTTTGTTTTGGTCTTCCTTACCTAG | 744 | 0.4315 | MSSAQDPFYIVKEEIQESIDKLLSTFHQWERIPVETGEQVHLTKELLASCESIEWQVDELDKTISVAAKDPAWYGIDEVELDKRRRWTSTAHTQVSNVKKSVVAGKESNGTGTANVNGMRREMMRMSNPHQADRSNQYGSQDNDDFISSESDRQLLLIRRQDEELDVLSASVERIGGVGLTIHEELLAQEKIIDELGSEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLVVLFIVLFVLVFLT* | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi5g1622 | 247 | CDD | SNARE_NTD_AtSYP61-like | 5 | 102 | - | - | |
| Vvi5g1622 | 247 | PANTHER | SYNTAXIN | 10 | 238 | IPR045242 | - | |
| Vvi5g1622 | 247 | Gene3D | - | 162 | 226 | - | - | |
| Vvi5g1622 | 247 | SUPERFAMILY | SNARE fusion complex | 154 | 217 | - | - | |
| Vvi5g1622 | 247 | FunFam | syntaxin-61 isoform X1 | 158 | 219 | - | - | |
| Vvi5g1622 | 247 | Pfam | SNARE domain | 192 | 243 | IPR000727 | - | |
| Vvi5g1622 | 247 | Gene3D | - | 2 | 104 | - | - | |
| Vvi5g1622 | 247 | FunFam | Syntaxin 10 | 3 | 105 | - | - | |
| Vvi5g1622 | 247 | SMART | tSNARE_6 | 150 | 217 | IPR000727 | - | |
| Vvi5g1622 | 247 | CDD | SNARE_Qc | 158 | 215 | - | - | |
| Vvi5g1622 | 247 | SUPERFAMILY | t-snare proteins | 5 | 102 | IPR010989 | GO:0016020|GO:0016192 | |
| Vvi5g1622 | 247 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 155 | 217 | IPR000727 | - | |
| Vvi5g1622 | 247 | Coils | Coil | 193 | 213 | - | - | |
| Vvi5g1622 | 247 | Pfam | Syntaxin 6, N-terminal | 6 | 99 | IPR015260 | GO:0016020|GO:0048193 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi5g1622 | 56 | 247 | SNARE and Associated Proteins | AT1G28490 | 71.354 | 1.89e-97 | 281 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi5g1622 | K08500 | - | vvi:100257700 | 439.884 |