Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1608 ATGAGTTTCCAGAAGGTGTTGGACATGAAGACCAAGCTAGTTCACTCATATCTTGTAGTGAGTGATACTATCCATGTTGATCTGAGTGCATCCACTGATAAAAAATGGAGACAACTGAGCAATGACCCGTCTTCAGTCATATCTAGTCACAGTATGCATTCTGGCGTTCATGCTACAACTTGGTATGCAATCTCTGTAGATGAAATTTTCATAAGGTGGTTTGGACCAAAATGGAGATACCTCAAGGTTCGATGGGATGAAACCTCTTATATTCTTCATCTAGAGCGTGTTCCTTTCTGGAATATAGGAGTTGCTTTGACGCCTCTTGCTTTGACACTTTTTGCTTTGAATCTACTTCCAGTTTCACGATACAGAGGCCTCGTTGATGCACCCTATGTCATCTTTGAAGACTATGGAAAAGAAGAGAGAGAAAACATGAGAAGGGGAGGTGGTGGCATGAGCAACGTGAATAAGAAAGGTGGTGGTGAGATTTCTCCAATTCCAGCGATTTCTAGGAAGATGGTTCAGAGCTTAAAGAAAGAATGGCACACATAA 555 0.4162 MSFQKVLDMKTKLVHSYLVVSDTIHVDLSASTDKKWRQLSNDPSSVISSHSMHSGVHATTWYAISVDEIFIRWFGPKWRYLKVRWDETSYILHLERVPFWNIGVALTPLALTLFALNLLPVSRYRGLVDAPYVIFEDYGKEERENMRRGGGGMSNVNKKGGGEISPIPAISRKMVQSLKKEWHT* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1608 184 Gene3D - 48 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1608 Vvi-Chr5 24039534 24040711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1608 27 77 B3 DNA Binding Superfamily AT5G62000 49.020 2.48e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1608 - - vvi:100250592 53.9138