Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1602 ATGCTGCAGGGAGCTTTCACTCATCAAGATTTTGTAGAGCATAAGGGCACAATCCGAACAGGAAATGTGCAGTGGATGACTGTAGGCAGAGGCATAATCCACTCTGAAATGCCCGTAAGTGAAGGAACCCAAAAGGGATTGCAGTTTTGGATCAATCTAACATCCAAAGAAAAAATGATTGAACCAAATTACCAAGAATTGCCAAGTGAAGACATCAAAAGAGCAGAGAAAGATGGCGTTAAAGTCTAG 249 0.4177 MLQGAFTHQDFVEHKGTIRTGNVQWMTVGRGIIHSEMPVSEGTQKGLQFWINLTSKEKMIEPNYQELPSEDIKRAEKDGVKV* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1602 82 PANTHER PIRIN-RELATED 1 82 IPR012093 -
Vvi5g1602 82 Gene3D Jelly Rolls 1 82 IPR014710 -
Vvi5g1602 82 Pfam Pirin 1 51 IPR003829 -
Vvi5g1602 82 SUPERFAMILY RmlC-like cupins 1 81 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1602 Vvi-Chr5 23969733 23969981 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1602 1 82 Calmodulin-binding Proteins AT1G50590 55.814 6.15e-30 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1602 K06911 - vvi:100254895 154.066