Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1601 ATGGTCGTCGGGAAAAACAAGAGGATTTCCAAGGGGAAAAAGGGAGGAAAGAAGAAGGCAGCCGACCCTTTTGCTAAGAAGGACTGGTATGACATTAAGGCGCCTTCGATCTTCAGCGTCAGAAATGTTAGCAAAACCCTTGTTAGCAGAACTTTGGGAACCAAGATCGCCTCTGAAGGGCTCAAGCACAGAGTGTTTGAGATTTCCCTGGCTGATATTCAGAACGATGAGGATCATGCCTACAGGAAGATCCGACTGAGAGCCGAGGACGTGCAAGGAAAGACTCACAAACATCTATGGAATGACTGGAGATGGTGTCAATGA 324 0.4753 MVVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSIFSVRNVSKTLVSRTLGTKIASEGLKHRVFEISLADIQNDEDHAYRKIRLRAEDVQGKTHKHLWNDWRWCQ* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1601 107 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Vvi5g1601 107 MobiDBLite consensus disorder prediction 1 21 - -
Vvi5g1601 107 MobiDBLite consensus disorder prediction 1 15 - -
Vvi5g1601 107 SMART Ribosomal_S3Ae_2 15 102 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vvi5g1601 107 Pfam Ribosomal S3Ae family 16 96 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vvi5g1601 107 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1601 Vvi-Chr5 23960216 23960539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1601 1 94 Cytoplasmic Ribosomal Protein Gene Family AT3G04840 85.106 1.05e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1601 K02984 - vvi:100232969 148.288