Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1600 ATGTTGGATAAGTTCGCAGTCGCACCACTTGCTGGTTTTCCGGATCATCCACACAGAGGCTTTGAGACTGTTACATACATGCTGCAGGGAGCTTTCACTCATCAAGATTTTGTAGAGCATAAGGGCACAATCCGAATAGGAAATGTGCAGTGGATGACTGTAGGCAGAGGCATAATCCACTCTGAAATGCCCGTAAGTGAAGGAACCCAAAAGGGATTACAGTTTTGGATCAATCTAACATCCAAAGAAAAAATGATTGAACCAAATTACCAAGAATTGCCAAGTGAAGACATCAAAAGAGCAGAGAAAGATGGCGTTAAAGTCTAG 327 0.4251 MLDKFAVAPLAGFPDHPHRGFETVTYMLQGAFTHQDFVEHKGTIRIGNVQWMTVGRGIIHSEMPVSEGTQKGLQFWINLTSKEKMIEPNYQELPSEDIKRAEKDGVKV* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1600 108 Gene3D Jelly Rolls 1 108 IPR014710 -
Vvi5g1600 108 Pfam Pirin 11 77 IPR003829 -
Vvi5g1600 108 PANTHER PIRIN-RELATED 1 108 IPR012093 -
Vvi5g1600 108 CDD cupin_pirin_N 1 79 - -
Vvi5g1600 108 SUPERFAMILY RmlC-like cupins 1 107 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1600 Vvi-Chr5 23946874 23947200 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1600 1 108 Calmodulin-binding Proteins AT3G59220 63.889 7.39e-44 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1600 K06911 - vvi:100254895 202.986