Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1592 ATGGGAAAGAAAGGGAGTTGGTTTTCTGCAATCAAGAGGGTTTTCATACCCAACTCCAAAGAGAAACTAGTCAATGGAACAGAGAGGAAAAATGCGAAAGAGAAGAAAAAGAAAGGGCGAGATACACATTCTTTTATTCCGCTCTTCAGAGAGCCAAGTAGTATTGAAAAAATATTAGGGGATGCTGAAAGAGAGCAGCAAAATAAGATATTTCTTAGGCCTCCAACGCCTTCTGAGACACCAAAAGTACCAACTCCTGTGCCTCCTAGAGTTTCCTCTCCGAGGGTAACTTCTCCAAGGGCTGCTGCTTCACCGAGGGCTGCTGCTTCACCGAGGGCTGTTGCATCACCGAGGGCTGTTGCATCACCGAGGGCTGCTGCTTCACCAAGGGCTGCGTCTCCTCGGGCTTTTCATCATCACAAGGAAGTCAGCTACAGACCCGAACCAACTCTCAGGAATCACCATATTGCAGCTATCAGGATCCAGACAGCATACAGAGGTTATATGGCAAGGAGGAGCTTCAGAGCACTCAGGGGTCTGGTGAGGCTACAGGGAGTCGTGAGAGGCCAGAATGTGAAGCGCCAGACAACAAATGCAATGAAATGCATGCAGCTGTTAGTGCGGGTTCAGTCACAGATTCAGTCCCGGAGGATCCAGATGTTAGAAAACCAGGCACTCCAACGTCAATCTCAATACAAAAATGACAAGGAACTGGAGAGCAGCATAGGCAAATGGGCCTCAAGCCAGCCATCTGAGGCAGGTAACAATGAAGACTGGGATGATAGCCAGCTGACGAAAGAGCAAATAGAAGCTAGGTTGCAGAAAAAGGTGGAGGCAGTCATCAAGAGAGAAAGAGCCATGGCCTATGCATATTCCCACCAGTTGTGGAAAGCCACCCCTAAATCAGCTCAAGCATCTATAATGGATATCCGATCTGGGGGATTCCCATGGTGGTGGAACTGGTTAGAACGTCAGCTCCCTCCGGCAAATCCTCCTGAAAGTCAAGCCACCAAGAGCATCCTACTAACACCCACAAGACCGACTCCAGATCTCAGGCCAAGTCCTCGACCCCAAGCAAGCAACTACAGGCAACAGAGTTTCGGGTTTGACAATCTTGAGTCACTCACACCAAAGTCCTCAAAATCAGCAGTACCTGCAAGAGCAAAGACCCCTCCAAATAGAGTGCCACAAGCGAACGGCTCAAATCTATCAAGATATCCAAAGCCGAGAGCTAGTGCAGCTGATTCTACCTTTGATGTGCCACTGAGAGATGATGATAGCCTCACCAGTTGCCCGCCATTTTCAGTTCCAAACTACATGACTCCAACAGTGTCAGCTAAAGCCAAAGTGAGAGCTAACAGCAACCCCAAGGAGAGGTATCCAGTGACTCCCAGTGCTGAATCAAAGAGGCGGCTTTCGTTCCCTTTGGGTCAAGGCATTGGGTCTTTCAAGTGGAACAAAGGCACCTTGTTCTCTAGCAAGGATTCCACCTCTCAGAGGGTGATAGAGAGGCACCAGTCTCTGCAATCTACTGGGAATTTGAGTGTGGATTCGACCGTTTCTTTGCCAGCTACAGTTGGGAGGAAGCCATTTAACCGATTTGTGTGA 1608 0.4894 MGKKGSWFSAIKRVFIPNSKEKLVNGTERKNAKEKKKKGRDTHSFIPLFREPSSIEKILGDAEREQQNKIFLRPPTPSETPKVPTPVPPRVSSPRVTSPRAAASPRAAASPRAVASPRAVASPRAAASPRAASPRAFHHHKEVSYRPEPTLRNHHIAAIRIQTAYRGYMARRSFRALRGLVRLQGVVRGQNVKRQTTNAMKCMQLLVRVQSQIQSRRIQMLENQALQRQSQYKNDKELESSIGKWASSQPSEAGNNEDWDDSQLTKEQIEARLQKKVEAVIKRERAMAYAYSHQLWKATPKSAQASIMDIRSGGFPWWWNWLERQLPPANPPESQATKSILLTPTRPTPDLRPSPRPQASNYRQQSFGFDNLESLTPKSSKSAVPARAKTPPNRVPQANGSNLSRYPKPRASAADSTFDVPLRDDDSLTSCPPFSVPNYMTPTVSAKAKVRANSNPKERYPVTPSAESKRRLSFPLGQGIGSFKWNKGTLFSSKDSTSQRVIERHQSLQSTGNLSVDSTVSLPATVGRKPFNRFV* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1592 535 MobiDBLite consensus disorder prediction 77 93 - -
Vvi5g1592 535 MobiDBLite consensus disorder prediction 25 142 - -
Vvi5g1592 535 SMART iq_5 153 175 IPR000048 GO:0005515
Vvi5g1592 535 PANTHER IQ-DOMAIN 5-RELATED 1 477 - -
Vvi5g1592 535 MobiDBLite consensus disorder prediction 241 258 - -
Vvi5g1592 535 MobiDBLite consensus disorder prediction 229 262 - -
Vvi5g1592 535 MobiDBLite consensus disorder prediction 25 45 - -
Vvi5g1592 535 Pfam Protein of unknown function (DUF4005) 414 480 IPR025064 -
Vvi5g1592 535 ProSiteProfiles IQ motif profile. 154 182 IPR000048 GO:0005515
Vvi5g1592 535 MobiDBLite consensus disorder prediction 355 383 - -
Vvi5g1592 535 MobiDBLite consensus disorder prediction 341 418 - -
Vvi5g1592 535 Pfam IQ calmodulin-binding motif 157 175 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1592 Vvi-Chr5 23891152 23893892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1592 1 534 IQD Protein Family AT3G59690 51.675 1.62e-159 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1592 - - vvi:100266234 920.228