Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1589 ATGGGCCAGCTGAAGGGAGATCCTCAAACCAATTCTGCATATGTTATCAAGTTAGAATTGTTGGCAGCTAAGAATCTTATTGGTGCAAACTTGAATGGCATGTCTGATCCTTATGCTATAATCACTTGTGGTGAGGAAAAGCGATTCAGTTCAATGGTTCCTGGTTCAAGAAATCCTATGTGGGGAGAGGAGTTCAATTTTTCTGTTGATGACCTTCCTGTTAAGATTAATGTGACAATATATGATTGGGATATAATTTGGAAAAGTACAATTCTTGGTTCAGTGACTGTTCCAGTTGAAACTGAAGGTCAAACTGGTGCAGTGTGGTATTCATTAGATAGCACATCAGGACAAGTTTGTCTCCATATTAAAACAATAAAACTTCCTGTAAATTCTTCCAGGGTTTTGAATGGCTATTCTGGAGCTAACACTCGAAGAAGAATGTCTTCAGATAAACAAGGGCCCACTCTGGTTCATCAAAAACCTGGGCCTCTGCAAACGATATTTAACCTCCATCCAGATGAGGTTGTTGAACATAGCTATTCATGTGCCCTTGAAAGATCTTTCTTGTATCATGGTCGTATGTACGTCTCTGGATGGCACATTTGCTTCCATTCTAATGTATTTTCTAAGCAAATGAAGGTGATTATACCATTTCAAGATATAGATGAGATAAAGAGGAGTCAGCATGCATTCATTAATCCTGCTATTACAATTATTCTTCGCATGGGTGCTGGTGGGCATGGTGTACCCCCTTTGGGAAGTCCTGATGGTAGGGTCAGATATAAATTTGCATCATTTTGGAACAGAAATCATGCATTAAGAACTTTACAGCGCTTTGCAAAGAACTTCCATACAATGTTAGAAGCAGAAAAGAAGGAGAACGCAGAGTCGGAACTGCGTGCACATAGCAGCTCTATCAAAGGTAGAAGCCAGGCAAAGATTTCTGAAGATAGCTTGCCTACAGCCATAGAGTTCCAACCCTTTGTCAAAGAAGAAGCTCTAATTAGTATATATAATGATGCTTTCCCTTGTACGGCTGAGCAGTTCTTCAATATATTGTTGCATGATGATTCAAATTATATAAACGAGTATCGTCTAGCACGAAAGGATGCTAATCTTGTTGTGGGACAGTGGCATGCCACAGATGAATATGATGGCCAAGTGCGAGAGATAACATTCAGATCCCTGTGTACCAGTCCCATGTGCCCCCCAGACACAGCCATGACAGAGTATCAGCATGCTGTTGTGTCCCCAGATAAGAAAGTTTTGGTGTTTGAGACTGTGCAACAAGCTCATGATGTTCCATTCGGGTCCCATTTTGAGGTTCACTGCAAGTGGAGATTGGAGACCAATTCTGAATCCTCGTGTACAATGGAAATAAAAGCTGGTGCACATTTTAAGAAATGGTGTGTGATGCAATCCAAAATCAGATCGGGTGCAATCAATGAGTACAAGAAAGAGGTGGAGACGATGCTGGAGGTGGCTCGCTCATACATCAAGTCAAAGACTTCCGGTGGTGAGATCGAGGATGCCCCATCCTCTTCCTCCCCTGTATTACAAGATGCACTATAA 1575 0.4152 MGQLKGDPQTNSAYVIKLELLAAKNLIGANLNGMSDPYAIITCGEEKRFSSMVPGSRNPMWGEEFNFSVDDLPVKINVTIYDWDIIWKSTILGSVTVPVETEGQTGAVWYSLDSTSGQVCLHIKTIKLPVNSSRVLNGYSGANTRRRMSSDKQGPTLVHQKPGPLQTIFNLHPDEVVEHSYSCALERSFLYHGRMYVSGWHICFHSNVFSKQMKVIIPFQDIDEIKRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRTLQRFAKNFHTMLEAEKKENAESELRAHSSSIKGRSQAKISEDSLPTAIEFQPFVKEEALISIYNDAFPCTAEQFFNILLHDDSNYINEYRLARKDANLVVGQWHATDEYDGQVREITFRSLCTSPMCPPDTAMTEYQHAVVSPDKKVLVFETVQQAHDVPFGSHFEVHCKWRLETNSESSCTMEIKAGAHFKKWCVMQSKIRSGAINEYKKEVETMLEVARSYIKSKTSGGEIEDAPSSSSPVLQDAL* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1589 524 FunFam BAG-associated GRAM protein 1 isoform X2 164 283 - -
Vvi5g1589 524 CDD C2 16 112 - -
Vvi5g1589 524 MobiDBLite consensus disorder prediction 508 524 - -
Vvi5g1589 524 Pfam C2 domain 16 112 IPR000008 -
Vvi5g1589 524 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Vvi5g1589 524 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 1 513 IPR044655 -
Vvi5g1589 524 SMART C2_3c 15 111 IPR000008 -
Vvi5g1589 524 ProSiteProfiles VASt domain profile. 334 504 IPR031968 -
Vvi5g1589 524 Gene3D - 164 283 IPR011993 -
Vvi5g1589 524 PRINTS C2 domain signature 55 68 IPR000008 -
Vvi5g1589 524 PRINTS C2 domain signature 31 43 IPR000008 -
Vvi5g1589 524 PRINTS C2 domain signature 76 84 IPR000008 -
Vvi5g1589 524 MobiDBLite consensus disorder prediction 504 524 - -
Vvi5g1589 524 Gene3D C2 domain 4 127 IPR035892 -
Vvi5g1589 524 Pfam VAD1 Analog of StAR-related lipid transfer domain 338 483 IPR031968 -
Vvi5g1589 524 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 123 IPR035892 -
Vvi5g1589 524 SMART gram2001c 163 229 IPR004182 -
Vvi5g1589 524 Pfam GRAM domain 166 235 IPR004182 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1589 35 100 C2H2 Transcription Factor Family AT4G21160 30.303 2.13e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1589 - - vvi:100261007 1071.23