Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1587 ATGGCGGAGCATAAACGGAGCCCCATCTCCGTCGACCAAGGTGGTCTCACTTCTCTTGCGCCGAAACGACAAAAGCCCGATTTAACCATTTCCACCAAGGAAAGGAAAGAGAAGGTTGGCGAGCGCATTGCAGCTCTGCAACAGCTTGTTTCACCCTTTGGAAAGACAGATACAGCTTCGGTTCTTCTAGAGGCAATGGAGTACATAAGATTCCTTCAGGAGCAAGTTAAGGTGTTGAGCGCTCCATACCTTCAGAGTACAACAACAGCTAAGATGCAGGAGTTAGAGCGATACAGTTTAAGGAGTAGAGGTTTATGTCTTGTACCGATTTCGTACACTGTTGGGGTGGCTCGAAGCAACGGTGCAGATATCTGGGCACCCATCAAGACCGATTCCTCCCCCAAGTTCTAG 411 0.4915 MAEHKRSPISVDQGGLTSLAPKRQKPDLTISTKERKEKVGERIAALQQLVSPFGKTDTASVLLEAMEYIRFLQEQVKVLSAPYLQSTTTAKMQELERYSLRSRGLCLVPISYTVGVARSNGADIWAPIKTDSSPKF* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1587 136 FunFam Transcription factor bHLH113 family 22 98 - -
Vvi5g1587 136 CDD bHLH_AtbHLH_like 29 80 IPR045239 -
Vvi5g1587 136 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 30 85 IPR036638 GO:0046983
Vvi5g1587 136 Gene3D - 20 98 IPR036638 GO:0046983
Vvi5g1587 136 SMART finulus 29 78 IPR011598 GO:0046983
Vvi5g1587 136 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 114 - -
Vvi5g1587 136 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 23 72 IPR011598 GO:0046983
Vvi5g1587 136 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1587 Vvi-Chr5 23818002 23819650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1587 1 136 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 56.962 7.20e-57 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1587 - - vvi:100243890 265.774