Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi5g1586 | ATGGTGGATGACTTCATGGTGTGTGTGGATAGGATCATAGCATCAGCATGCTTTGAATCAGTGAATGGAGGAGGTGGAGGAGTGAGAGGTGAAGGGAGTGAGAATGTGTGTGCTGTTACTAACAGTGGAGGAGCAGGAGGAGGAGGAGAGTGGTGTTCAAAGAAGGAGGGAGGGATGGTCAAAGGTGGTGGGGTTGTGGTTGAGTGTAGGATATGCCAGGAAGAAGATGAAGAGCATGCAATGGAGGCCCCTTGTGCCTGCAATGGCACTCTCAAGTTTGCTCATAGGAAGTGCATTCAGAGATGGTGCAACAAGAAAGGCGACACCACCTGTGAAATCTGCAATCAGGTATTTTCACCGAATTATTCTCTTCCACCAGGCAGAAGCAATCCTGATGTAATGGCGATTGATATCAGACAAGCATGGGGGCCCCATATTGATCTCCGGGATCCTCATTTTCTAGCGCTAGCTGCTGCTGAACGTCAGCTACTGCAGTCAGAATACGAAGACTATGCTGTTGCAAACACTGGTAGCATTGCCTGCCTCCGGTCCGTTGCTCTCATTTTGTTGATAGTTTTGCTTATACGGCAAGCTCTGATGGTCACAAGAGACTCTGGGATGGTTCAGGAATCATCGATATTCTTCAATTTTCAGATATCGCTGCTTCAATTTGCTGGTTTTCTTCTCCCATGCTACGTGATGGCCCGATCATGGTACATTATACAGTGTCGAAGGAGGCGGCAGGGTTAA | 750 | 0.4813 | MVDDFMVCVDRIIASACFESVNGGGGGVRGEGSENVCAVTNSGGAGGGGEWCSKKEGGMVKGGGVVVECRICQEEDEEHAMEAPCACNGTLKFAHRKCIQRWCNKKGDTTCEICNQVFSPNYSLPPGRSNPDVMAIDIRQAWGPHIDLRDPHFLALAAAERQLLQSEYEDYAVANTGSIACLRSVALILLIVLLIRQALMVTRDSGMVQESSIFFNFQISLLQFAGFLLPCYVMARSWYIIQCRRRRQG* | 250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi5g1586 | 249 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 125 | IPR013083 | - | |
| Vvi5g1586 | 249 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 248 | IPR033275 | - | |
| Vvi5g1586 | 249 | Pfam | Protein of unknown function (DUF3675) | 120 | 238 | IPR022143 | - | |
| Vvi5g1586 | 249 | Pfam | RING-variant domain | 69 | 114 | IPR011016 | GO:0008270 | |
| Vvi5g1586 | 249 | SMART | ringv_2 | 68 | 115 | IPR011016 | GO:0008270 | |
| Vvi5g1586 | 249 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 61 | 121 | IPR011016 | GO:0008270 | |
| Vvi5g1586 | 249 | CDD | RING_CH-C4HC3_MARCH | 69 | 115 | - | - | |
| Vvi5g1586 | 249 | SUPERFAMILY | RING/U-box | 67 | 118 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi5g1586 | Vvi-Chr5 | 23799621 | 23804206 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi5g1586 | 68 | 117 | C3H Transcription Factor Family | AT2G37950 | 45.283 | 1.42e-07 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi5g1586 | - | - | vvi:100254146 | 472.241 |