Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1577 ATGCAGTCTCTGAATCGTTTTCGTTGTCTCTCCCCTGCGTCCCCTTGTTTCAGATGGCTGGTATCGCGTGGTTCTTGCAGAAAATTGTTCATTGGAGATGCAGGTCTTTCTTATGATACCAATGAAACCATTCTAAAAGATGCTTTTGGACAGTACGGTGAAATAATTGAAGTTAAGGTTATATGTGATCATGTGAGTGGGAAATCAAAAGGCTATGGGTTTGTGCAGTTCACTTCTGACGATGACGCCCACATAGCTTTGAAAGAGATGGATGGTCAGTCACTGGATGGTAGAAATATTCGGGTGACTTATGCACACAAAGGGTGA 327 0.4281 MQSLNRFRCLSPASPCFRWLVSRGSCRKLFIGDAGLSYDTNETILKDAFGQYGEIIEVKVICDHVSGKSKGYGFVQFTSDDDAHIALKEMDGQSLDGRNIRVTYAHKG* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1577 108 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Vvi5g1577 108 Gene3D - 17 108 IPR012677 -
Vvi5g1577 108 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 6 107 - -
Vvi5g1577 108 SMART rrm1_1 28 103 IPR000504 GO:0003723
Vvi5g1577 108 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 12 108 - -
Vvi5g1577 108 SUPERFAMILY RNA-binding domain, RBD 25 107 IPR035979 GO:0003676
Vvi5g1577 108 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1577 Vvi-Chr5 23693567 23695593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1577 29 107 Eukaryotic Initiation Factors Gene Family AT4G34110 41.772 4.72e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1577 K13195 - vvi:100855070 221.476