Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1550 ATGAAAAATTGCAGGCAGTTGGATAAGAAGATCAAACAAGCCCATCATTGTTACAGTAGCATAATCTCATATGGGTTTTTAACGGTGGCTAGTACAAAGGCTGTTGAGTGGATGCTGAAAGTCAATGCTCACTATGGGCTTTCTGCTCTGACTGTAGTCCTTGCTGTTAATTATGTTGATAGGTTTCTGTCGAGTTCGTGTTTTCAGAGAGATAGGTCGTGGATGAGTCAACTCGCTGCTGCCACATGTCTCTCTTTGGCTGCAAAGGTGGACGAAACCGATGTTCCTCTTCTCTTAGACCTGCAGGTAGGGAAGGCTGCTAGGGCAAGCACAAGCTCCCAGAGTCTCAGCAATGGGCCACACCTTCTGAGTCAGCAGCGTTCTTTTCCAGGTGATATGGGCATAGCAGATGATTTGGGCTTTTTCAACTACCTGCATGAGGAGTTTGTGGAAGTTTCAGCTGCTGGCATTGACGAGAACGTGATTGGACAGTTTGGTATAGGATTCTACTTGGCTTACTTGGTGTTTGAGAAAGTGATTGTTACTATCAAGCACAATGATGACAAACAGTATGTACAAGAGTCTAAAGCTGGCGGAGCTTTCGCGGTTTCTGAGGATGTATGGAATGAACCACTTGGACGCGAAACTGAGATCAGATTTGCCTTTCAGAGAAAAAGCTGGGAGTACTTGGAGAAGGCCAAATTGAAGGAGTGGATGTCTGGTGGTGTGAATTCACCTGTTCGTGCCTTCAAGTCAGTTGGTGGACAACCTATTTTGATTGATTCTCTCAAGGGCTCTCACATGTGA 807 0.4548 MKNCRQLDKKIKQAHHCYSSIISYGFLTVASTKAVEWMLKVNAHYGLSALTVVLAVNYVDRFLSSSCFQRDRSWMSQLAAATCLSLAAKVDETDVPLLLDLQVGKAARASTSSQSLSNGPHLLSQQRSFPGDMGIADDLGFFNYLHEEFVEVSAAGIDENVIGQFGIGFYLAYLVFEKVIVTIKHNDDKQYVQESKAGGAFAVSEDVWNEPLGRETEIRFAFQRKSWEYLEKAKLKEWMSGGVNSPVRAFKSVGGQPILIDSLKGSHM* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1550 268 SUPERFAMILY Cyclin-like 26 103 IPR036915 -
Vvi5g1550 268 SMART cyclin_7 36 158 IPR013763 -
Vvi5g1550 268 FunFam Cyclin N-terminal domain containing 2 22 127 - -
Vvi5g1550 268 Gene3D - 139 251 IPR036890 -
Vvi5g1550 268 PRINTS 90kDa heat shock protein signature 214 231 IPR020575 -
Vvi5g1550 268 PRINTS 90kDa heat shock protein signature 162 184 IPR020575 -
Vvi5g1550 268 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 148 238 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi5g1550 268 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 147 239 IPR036890 -
Vvi5g1550 268 Gene3D - 30 122 - -
Vvi5g1550 268 Pfam Cyclin, N-terminal domain 33 105 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1550 Vvi-Chr5 23484128 23486659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1550 12 106 Core Cell Cycle Gene Families AT3G50070 53.684 2.92e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1550 K14505 - vvi:100267897 167.548