Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1542 ATGAATTTTGACGCATCTACTGGATGGTGCAACAACCCCACAATGGAGCAGTCGTATGCCTCTTATGAAATGTCACCTCTCCAATCAATGCCTTACTCTGATGTATTTAATTTCAGTGATCAAAATGTTGCTACTAACAGTGTTAGTGATGGCAGAGAAGCAGACAATTCAAATGCTACAAGAAGTAACAACAGTCCTTTTCAACAGAACTTTGTTTCAGAAATTGGGTCAGATGCTAGGAGAAGTATCAGTTGTTTCCAACAGAATGTTGGTTCTGATATGGAGAATTGTTCTGATATGGGGAATTGTATGATTTCCAGGCCATTAGGACGTCCACTTGCTGAGAAGATGCTCACGGCTCTGTCTTTTTTTAAACAGTCATGTGAAGGAGGCATTCTTGCACAAGTTTGGGTTCCAATTAGAACAGGAGATCACTACATGTTAAGCACTTACGAGCAACCATACTTGCTTGACCAAACACTTGCAGGTTATCGTGAAGTCTCAAGGGCATTCACCTTCTCTGCAGAAGACAAATCAGGGCTTTTGCCAGGACTTCCTGGTCGAGTATTCATGTCTAAAGTTCCAGAGTGGACTTCAAATGTAGGCTATTACAACTTGGAGGAGTATTTGCGGGTAAAGCATGCTGCTCATCATGACGTTCGTGGATCTATTGCATTACCTGTTTTTGATCCTCCTGAGATGTCATGTTGCGCTGTTTTAGAGCTCGTGACTGTAGAAGAGAAATCTAATTTTGATTCAGAGATGGAAATGGTTTGTCAGGCCCTCGAGGCTGTGAACTTAAAGAGCACCACACCACCTCGACTTCAACAACAATACTCAAATAACCAGAGAGCTGCCTTGGCAGAGATCACTGATGTTTTACGAGCAGTATGTCATGCTCATAGATTGCCATTGGCTTTGACATGGATTCCATGTAATTTCATCAGGGGAGATGCTGATGAAATAATAAGAGTACGTATTAAACAGAGTAACACAAGTTCAAGTGGAAAATGCATGCTATGCATAGAGGAGACAGCTTGCTATGTAAATGATAGAGAGATGCAAGGTTTTGTGCATGCATGCATGAAGCATTATATTGAGGAAGGGCAAGGTGTTTCTGGAAAAGCACTCCAATCAAATCATCCCTTCTTCTTCCAGGATGTAAAGAAGTATGACATCAGTGAGTATCCACTTGTTCATCATGCACGCAAGTTTGGCCTGAATGCTGCTGTCGCAATTAGGTTGAGAAGCACCTTCACTGGTAATGATGATTATATATTGGAGTTCTTTCTCCCCCTTAGCATGAAAGGGAGTCCAGAACAGCAACTTTTGTTAAACAACCTCTCAGGCACCATGCAAAAGATGTGTAGGAGCTTGAGGAGAGTTTCAGACACAGAGTTGCTTGGAGTAGAATGTTCTAAATTTGGGATTGAAAGGGGAGCACTTACAAATTTACCCCCAATGCCTGTATCCGGAAGTAACTCTCAATTGGAATCGTCAGAATTTGAATTCAATTTGGACAGGATGGCTTTGGATGCATCTAACCTAGGAGTTGAGGGAATGGTGGCAAGTGTTCCCCGTGAAAAGAAAACAAGTGGATCAAGAAGACAGCAGGATAAAAGACGGACAGTGGCTGAGAAAAATGTGAGCCTCAGCCTCCTTCAGCAGTACTTTTCTGGGAGTCTCAAGGATGCAGCAAAAAGCATCGGAGTTTGCCCCACTACACTCAAAAGAATCTGCAGACAACATGGGATATCAAGATGGCCGTCCCGCAAGATCAACAAGGTGAACAGATCACTGAGGAAGATACAGACTGTCCTCAGTTCTGTTCAGGGAGTCGAAGGCGGATTGAAGTTCGACCCAGCCACTGGGGGGCTCGTAGCTGCAGGCTCCGTAATCCAAGACTTCGGTGCAGGTCCCAACATCCTTGTCCAGGACCTGCCCGTTCTGCACCCTGGGCCAGCTTCCCAAGCAGCACCCTCAGCACCTCCGGCAATAGTTGTTGATGGTGAGGTGAAGCTGGAGGAAGATGATTGTTACGTGGTTGGAACCCAGGGGTCCTCCAGGAGCTTGCAGCAGAACCTGAACCCGCCCAGGCGAGAGCAGAAGACATCCAACATCGCTCTGGTCGACTGTAGCGAAGACTCCAGATCCATGGATTTGGAAAGCGGATCGTTCCGGTCAGCAGCCAGCCTCGACGCCATGCCTTGGGCTCTTGCTGATAACCCCATGCTCGGTTCCTACTTCGCCCAAACATGCAGCACATGGGGGGCCAGGAGCTCAACCACAACCTTCCCGGCTGCTGCTGCCGTTGCCGCAGCCAATGAGATGGACACCGTAGTCGACGGTGATCAACCCACGTCTTCGGGCATGACAGCCTCGTCCAACAGCTCTGCCTCAATGGTTCATGCGAGTTCCTCAAGCTCGCCAAGTTTCGAGAGGCAGCTGCCGGCGAGGGGGAAGACAAAGGTGGAAGACGGTGGGTCGAAGATCACCGTAAAGGCTACATACAAAGAAGACACCATCAGATTCAAGTTTGAGCCTTCTGCTGGTTGCTTCCAACTATACGACGAAGTAGCCAGAAGGTTCGGACTTCAGATCGGCACATTCCAGCTCAAGTACCTTGATGATGAAGAAGAGTGGGTGATGCTGGTAAATGACGCCGATCTACAAGAGTGTCTTGACATTCTGGAGGATGTTGGATCCCGGAGCGTCAAGTTTCTCGTCCGGGACACTCCAGCCGCCATGGGTAGCTCCGGAAGCAGCAACTGCTTCCTGATCGGTGGATCTTAG 2793 0.474 MNFDASTGWCNNPTMEQSYASYEMSPLQSMPYSDVFNFSDQNVATNSVSDGREADNSNATRSNNSPFQQNFVSEIGSDARRSISCFQQNVGSDMENCSDMGNCMISRPLGRPLAEKMLTALSFFKQSCEGGILAQVWVPIRTGDHYMLSTYEQPYLLDQTLAGYREVSRAFTFSAEDKSGLLPGLPGRVFMSKVPEWTSNVGYYNLEEYLRVKHAAHHDVRGSIALPVFDPPEMSCCAVLELVTVEEKSNFDSEMEMVCQALEAVNLKSTTPPRLQQQYSNNQRAALAEITDVLRAVCHAHRLPLALTWIPCNFIRGDADEIIRVRIKQSNTSSSGKCMLCIEETACYVNDREMQGFVHACMKHYIEEGQGVSGKALQSNHPFFFQDVKKYDISEYPLVHHARKFGLNAAVAIRLRSTFTGNDDYILEFFLPLSMKGSPEQQLLLNNLSGTMQKMCRSLRRVSDTELLGVECSKFGIERGALTNLPPMPVSGSNSQLESSEFEFNLDRMALDASNLGVEGMVASVPREKKTSGSRRQQDKRRTVAEKNVSLSLLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLRKIQTVLSSVQGVEGGLKFDPATGGLVAAGSVIQDFGAGPNILVQDLPVLHPGPASQAAPSAPPAIVVDGEVKLEEDDCYVVGTQGSSRSLQQNLNPPRREQKTSNIALVDCSEDSRSMDLESGSFRSAASLDAMPWALADNPMLGSYFAQTCSTWGARSSTTTFPAAAAVAAANEMDTVVDGDQPTSSGMTASSNSSASMVHASSSSSPSFERQLPARGKTKVEDGGSKITVKATYKEDTIRFKFEPSAGCFQLYDEVARRFGLQIGTFQLKYLDDEEEWVMLVNDADLQECLDILEDVGSRSVKFLVRDTPAAMGSSGSSNCFLIGGS* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1542 930 ProSiteProfiles RWP-RK domain profile. 529 616 IPR003035 -
Vvi5g1542 930 Gene3D - 827 910 - -
Vvi5g1542 930 ProSiteProfiles PB1 domain profile. 830 912 IPR000270 GO:0005515
Vvi5g1542 930 MobiDBLite consensus disorder prediction 46 68 - -
Vvi5g1542 930 SUPERFAMILY CAD & PB1 domains 824 914 - -
Vvi5g1542 930 PANTHER PROTEIN NLP8 29 922 IPR045012 GO:0003700
Vvi5g1542 930 MobiDBLite consensus disorder prediction 784 815 - -
Vvi5g1542 930 SMART PB1_new 830 912 IPR000270 GO:0005515
Vvi5g1542 930 CDD PB1_NLP 831 911 IPR034891 -
Vvi5g1542 930 Pfam RWP-RK domain 548 596 IPR003035 -
Vvi5g1542 930 Pfam PB1 domain 831 911 IPR000270 GO:0005515
Vvi5g1542 930 MobiDBLite consensus disorder prediction 784 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1542 Vvi-Chr5 23398790 23403228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1542 1 929 NLP Transcription Factor Family AT2G43500 48.013 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vvi5g1542 PB1 2e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1542 - - vvi:100262961 1777.68