Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1541 ATGCCGAAGCAGATTCATGAGATCAAGGACTTCCTTCTCACTGCGAGGAGAAAAGATGCACGCTCCGTGAAGATCAAGAGGAGCAAGGATGTGGTTAAGTTCAAGGTCCGTTGCTCCAAGTACCTCTACACACTTTGCGTCTTTGATGCAGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCTCCAGGTTTGAGTGTCCAAGACCTGTGA 210 0.481 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKADKLKQSLPPGLSVQDL* 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1541 69 Gene3D - 1 69 IPR038464 -
Vvi5g1541 69 FunFam 60S ribosomal protein L38 1 69 - -
Vvi5g1541 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vvi5g1541 69 Pfam Ribosomal L38e protein family 2 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1541 Vvi-Chr5 23365306 23368215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1541 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 95.652 2.49e-44 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1541 K02923 - vvi:100268138 139.428