Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1531 ATGGACAAGGATAAATCTCCGGGGCACGGAGGAGGCTTTCCACCTCCGTCCGGGCGTTACTCTTTCTCTCCAACTGGGAATTCATTCAATGCGAAACCCGAATCATCATCTCCGAATTTGCCTCCGTTGCCCGTTGGCTCTGGCTCTGAATCCTCTCATTTCGGGCACGGAATTTCTCCGGATTCTAATCGTTTTAGCCATGATATAAGCCGAATGCCCGATAACCCGCCAAAGAATCTGGGTCACCGGCGTGCCCATTCCGAGATTCTTACTCTTCCCGATGACCTTAGTTTTGATAGTGATCTTGGCGTGGTGGGTGGCGCTGACGGGCCTTCGTTCTCAGATGAGACCGAAGAGGACTTATTTTCTATGTACCTTGATATGGATAAGTTGAATTCCTCTTCTGCAACATCGTCATTTCAAATGGGTGAGCCATCTTCTGCGGCCCCACTGGGATCCGCTTCGGCAGCAATGACTGAGAATGTAGTTGCTCGGCCTAATGATAGGCGAGTTAGGCATCAGCATAGCCAGTCCATGGATGGGTCGACCAGCATTAAGCCTGAGATGCTCATGTCGGGTTCCGACGAGAACTCAGCAGCTGATTCCAAGAAAGCCATGTCCGCTGCTAAGCTTGCGGAGCTTGCTCTCATTGATCCAAAGCGTGCAAAGAGGATTTGGGCAAATAGGCAATCTGCTGCAAGGTCAAAGGAAAGGAAGATGAGATACATAGCTGAGCTTGAACGTAAAGTACAGACCCTGCAAACAGAAGCAACATCATTGTCTGCTCAGTTGACCCTGTTGCAGAGAGATACAAATGGTCTGACGGCTGAAAACAGTGAACTGAAACTGCGTTTGCAAACAATGGAGCAACAGGTTAACTTGCAAGATGCATTAAATGATGCATTGAAAGAGGAGATCCAGCATCTGAAAGTTTTGACTGGGCAAACTATGCCAAATGGTGCACCTATGATGAACTTCCCTCAGTCTTATGGAACTGGCGCACAATTTTATCCCAACAATCAGGCCATGCACACTCTTTTAACTGCACAGCAGTTTCAGCAGCTCCAGATTCATTCTCATAAGCAGCATCAGCTTCAGCAGCATCAACTGCACCAGCTGCAGCAGCAGCAGCAGCAGATTCAACAGCAGATTCAGCAGCAACAAATGCAGCAGGAACAGCCTCAACAAGCTGGAGATCTGAAAATCCGAGGATCTATGGCTTCTCCGAGCCAGAAGGAAAATGCATCAGACACCAACTCTTCTGCTGTGAAAGAATGA 1278 0.4844 MDKDKSPGHGGGFPPPSGRYSFSPTGNSFNAKPESSSPNLPPLPVGSGSESSHFGHGISPDSNRFSHDISRMPDNPPKNLGHRRAHSEILTLPDDLSFDSDLGVVGGADGPSFSDETEEDLFSMYLDMDKLNSSSATSSFQMGEPSSAAPLGSASAAMTENVVARPNDRRVRHQHSQSMDGSTSIKPEMLMSGSDENSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVNLQDALNDALKEEIQHLKVLTGQTMPNGAPMMNFPQSYGTGAQFYPNNQAMHTLLTAQQFQQLQIHSHKQHQLQQHQLHQLQQQQQQIQQQIQQQQMQQEQPQQAGDLKIRGSMASPSQKENASDTNSSAVKE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1531 425 Pfam bZIP transcription factor 220 274 IPR004827 GO:0003700|GO:0006355
Vvi5g1531 425 Gene3D - 219 272 - -
Vvi5g1531 425 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 31 395 - -
Vvi5g1531 425 Coils Coil 363 393 - -
Vvi5g1531 425 SUPERFAMILY Leucine zipper domain 220 271 IPR046347 GO:0003700|GO:0006355
Vvi5g1531 425 MobiDBLite consensus disorder prediction 407 425 - -
Vvi5g1531 425 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 218 281 IPR004827 GO:0003700|GO:0006355
Vvi5g1531 425 MobiDBLite consensus disorder prediction 1 83 - -
Vvi5g1531 425 MobiDBLite consensus disorder prediction 135 204 - -
Vvi5g1531 425 SMART brlzneu 216 280 IPR004827 GO:0003700|GO:0006355
Vvi5g1531 425 Coils Coil 236 305 - -
Vvi5g1531 425 MobiDBLite consensus disorder prediction 177 201 - -
Vvi5g1531 425 CDD bZIP_plant_RF2 221 270 IPR044759 GO:0003700|GO:0006355
Vvi5g1531 425 MobiDBLite consensus disorder prediction 135 154 - -
Vvi5g1531 425 FunFam probable transcription factor PosF21 219 272 - -
Vvi5g1531 425 MobiDBLite consensus disorder prediction 20 66 - -
Vvi5g1531 425 MobiDBLite consensus disorder prediction 385 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1531 Vvi-Chr5 23226800 23231098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1531 19 349 bZIP Transcription Factor Family AT1G06070 74.107 8.93e-164 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi5g1531 bZIP_1 2.3e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1531 - - vvi:100266402 713.761