Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1483 ATGAAGATTCAGTGTGACGTGTGTGAGAGGGCACCAGCTACTGTGATTTGCTGTGCAGATGAGGCAGCACTGTGTGCAAAATGTGATGTTGAGGTCCATGCAGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTTCTTCAATGCCTCTCCAACAAGCTTCCACCTTGTGACATATGCCAAGAGAAGGCAGCTTTCATTTTCTGTGTTGAAGATAGGGCTCTCTTTTGCCGGGATTGTGATGAACCAATCCATTCAGCTGGTAACCTTGCTGCCAACCACCAGAGGTTTTTGGCCACTGGAATCCGGGTGGCTTTAAGCTCAAAATGTGCCAAGGAGACTGATAAGAGCTCTTCGGAACCACCACCCAATCAGAATTCACAACAGATTACCATGAAAATGCCTCCACAGCAAGCCCCTAACTTTACATCTTCTTCATGGGCTGTTGATGACTTGTTACAGTTTTCGGACTTTGAATCCTCTGACAAGAATAAACAACTTGAGTTTGGCGAGCTTGAGTGGTTGACAGAAATGGGCATCTTTGGTGATCAAGTTCCCCAGGAGGCCATGGCAGCAGCTGAGGTTCCCCAGCTCCCTATTTCACAGCCAAGCTATGGCGCCTCATACAGAGCCACCAAATCCAGCATGCCCTACAAAAGGCCCAGGATCGAAATCCTTGACGACGAGGATGAACACTTCACCGTGCCTGATCTTGGCTGA 720 0.4861 MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCRDCDEPIHSAGNLAANHQRFLATGIRVALSSKCAKETDKSSSEPPPNQNSQQITMKMPPQQAPNFTSSSWAVDDLLQFSDFESSDKNKQLEFGELEWLTEMGIFGDQVPQEAMAAAEVPQLPISQPSYGASYRATKSSMPYKRPRIEILDDEDEHFTVPDLG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1483 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Vvi5g1483 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi5g1483 239 CDD Bbox1_BBX-like 5 47 - -
Vvi5g1483 239 Gene3D Classic Zinc Finger 1 95 - -
Vvi5g1483 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 238 - -
Vvi5g1483 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vvi5g1483 239 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Vvi5g1483 239 CDD Bbox1_BBX-like 56 98 - -
Vvi5g1483 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi5g1483 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vvi5g1483 239 MobiDBLite consensus disorder prediction 112 143 - -
Vvi5g1483 239 MobiDBLite consensus disorder prediction 117 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1483 Vvi-Chr5 22644172 22646527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1483 1 163 Orphan Transcription Factor Family AT1G06040 67.857 1.20e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vvi5g1483 zf-B_box 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1483 - - vvi:100257595 489.189