Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1477 ATGGATTTTGGAGTTGGTGGTGATGCTAATGGGGAGGTGGTGGTAAGGAGTTCTGTTGATATGGTTAGGACCAGTGATGAGAGTGAAATGGGGGGAAATTCAGTTGAAGTGGCGTTCCAATCAAGCGAGGACAATAAATTGAATCAAGATTCTTCGGGAACGGAAATCATTCCAGTAGTTGAGCCTTATGTGGATGAGCCCTATGTAGGTCAGGAGTTTGAATCTGAAGCAGCCGCACATGCTTTTTATAATGCATATGCGACACGTGTGGGTTTCATCATTCGCGTGAGCAAGCTGTCTCGATCCAGGCGTGATGGATCAGCCATTGGTCGGGCACTTGTTTGTAACAAGGAAGGTTATCGAATGCCTGACAAGCGTGAAAAAATTGTAAGGCAAAGAGCGGAGACAAGGGTAGGTTGCAGGGCCATGATTTTGGTGAGGAAAGTAAGTTCTGGCAAATGGGTTGTCACAAAATTTGTGAAGGAGCATACTCACACTTTGACTCCTGGCAAAGGTCGAAGAGATTTGATTTATGATCAGTATCCGAATGAACATGACAAGATAAGGGAACTATCCCAGCAGCTGGCAGTCGAGAAAAAGCGAGCTGCAACATATAAAAGGCATCTAGAAATGGTGTTTGAGTACATTGAGGAGCACAACGAGAGTCTATCAAAGAAGATTCAACACATAGTAGACAGCGTGAGGGACATGGAAAACAAGGAGAAGCAAAACCACAGATAG 741 0.4467 MDFGVGGDANGEVVVRSSVDMVRTSDESEMGGNSVEVAFQSSEDNKLNQDSSGTEIIPVVEPYVDEPYVGQEFESEAAAHAFYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHTLTPGKGRRDLIYDQYPNEHDKIRELSQQLAVEKKRAATYKRHLEMVFEYIEEHNESLSKKIQHIVDSVRDMENKEKQNHR* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1477 246 Pfam FAR1 DNA-binding domain 82 168 IPR004330 -
Vvi5g1477 246 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 10 245 - -
Vvi5g1477 246 Coils Coil 188 208 - -
Vvi5g1477 246 Coils Coil 220 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1477 Vvi-Chr5 22582417 22588015 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi5g1477 FAR1 2.3e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1477 - - vvi:100250990 472.241