Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1473 ATGAATCAACCAGTCCAGAAGAATACCCTCTATGTTGGGGGGCTAGCAGAGGAGGTGAATGAGTCGATACTGCATTCGGCATTCATACCTTTCGGGGACATAAAGGATGTGAAGCATAGATCCTTTGGGTTCGTGACCTTCCTGGAGAAGGAAGATGCAGCTGCTCTCATGGACAACATGGATGGTGCTGAGCTCTATGGTCGAGTCCTCACTGTTAATTATGCCCTTCCTGAACGTATCAAGGGTGGCGAACAGGGTTGGGCTGCTCGACCCATTTGGGCTGATGCTGACACATGGTTCGAACGACAACAACAAGAAGAGGAAATGCAGCGCATTCAAGCTGAGAATCGGGCTGCAATGCAGGCAGCCGAGGAGTTACACAGAAAGAAAATGGCACAGGAACGGGAAGGGGAGAAGGACGAAGAAGTAGAGGGCAAGGATGATCCCATGGCAAGGGTGGAAGCATACAAGAGAAAAATGAACAACAGTGAGATTTTGAGAGAATAG 507 0.4931 MNQPVQKNTLYVGGLAEEVNESILHSAFIPFGDIKDVKHRSFGFVTFLEKEDAAALMDNMDGAELYGRVLTVNYALPERIKGGEQGWAARPIWADADTWFERQQQEEEMQRIQAENRAAMQAAEELHRKKMAQEREGEKDEEVEGKDDPMARVEAYKRKMNNSEILRE* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1473 168 SMART rrm1_1 9 73 IPR000504 GO:0003723
Vvi5g1473 168 CDD RRM_PPIE 10 75 IPR034168 GO:0003723
Vvi5g1473 168 Coils Coil 102 136 - -
Vvi5g1473 168 FunFam Peptidyl-prolyl cis-trans isomerase 1 144 - -
Vvi5g1473 168 MobiDBLite consensus disorder prediction 117 168 - -
Vvi5g1473 168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 70 IPR000504 GO:0003723
Vvi5g1473 168 Gene3D - 1 152 IPR012677 -
Vvi5g1473 168 MobiDBLite consensus disorder prediction 121 168 - -
Vvi5g1473 168 PANTHER ATPASE E1 1 166 - -
Vvi5g1473 168 SUPERFAMILY RNA-binding domain, RBD 4 87 IPR035979 GO:0003676
Vvi5g1473 168 Coils Coil 166 168 - -
Vvi5g1473 168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1473 Vvi-Chr5 22562179 22564255 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1473 8 77 Eukaryotic Initiation Factors Gene Family AT3G11400 31.646 8.69e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1473 - K09564 vvi:100249250 323.553