Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1472 ATGTTGATCAAGCCTTCAACAATTATTCAACCATTGGATTTTGGGGCCACGAACGATGTTGGTGGTGAGGTGGTGGGGAATTCTGTTAATATGGAGGGTGACCAGCAGGGAAGTTTTGTTGAAGCGATAGCTCAACAAGGTGAGGATGATAATTTAGATCAATATTCTTCAGGAATGGAAATAGTTCTTGGAGATGAACCTTATGTGGGTCAGGAGTTTGACTCTGAAGCTGCAGCTTACGCTTTTTATAAGGCATATGCAAAGTGGGTAGGTTTCATCATTCGTGCAAGCAGGCTTTCTAGATTGAAGGATCATAGATCTGAAACTCGCAGGATGCTGGTTTGTACTAGGGAGGGTTTTAGATTGTGTGACAAGCATGAAAGTGCTCTAGAAAACAAGGAAGAGAGAAAGGCTGGTTGCAAGGCAAAACTTGTAATGAAGAAAATGATTTCTGGTAAATGGGTTGTCCAGAAATTTATCAAGGAACACAATCACACTATGGCTCCTATTAAGGGTCAAAGAGATTTGATCTATGATCAATATCTGGCTCAACACCCTAACCCTGAGGGGTAG 573 0.4171 MLIKPSTIIQPLDFGATNDVGGEVVGNSVNMEGDQQGSFVEAIAQQGEDDNLDQYSSGMEIVLGDEPYVGQEFDSEAAAYAFYKAYAKWVGFIIRASRLSRLKDHRSETRRMLVCTREGFRLCDKHESALENKEERKAGCKAKLVMKKMISGKWVVQKFIKEHNHTMAPIKGQRDLIYDQYLAQHPNPEG* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1472 190 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 30 169 - -
Vvi5g1472 190 Pfam FAR1 DNA-binding domain 82 168 IPR004330 -
Vvi5g1472 190 Coils Coil 123 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1472 Vvi-Chr5 22555739 22556994 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi5g1472 FAR1 4.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1472 - - vvi:100254348 346.28