Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1464 ATGAATCAACCAGTCCAGAAGAATACCCTCTATGTTGGGGGGCTAGCAGAGGAGGTGAATGAGTCGATACTGCATTCGGCATTCATACCTTTCGGGGACATAAAGGATGTGAAGACACCATTGGACCAGGCAACCCAGAAGCATAGATCCTTTGGGTTCGTGACCTTCCTGGAGAAGGAAGATGCAGCTGCTGCCATGGACAACATGGATGGTGCTGAGCTCTATGGTCGAGTCCTCACTGTTAATTATGCCCTTCCTGAACGTATCAAGGGTGGTGAACAGGGTTGGGCTGCTCAACCCATTTGGGCTGATGCTGACACATGGTTCGAACGACAACAACAAGAAGAGGAAATGCAGCGCATTCAAGCTGAGAATCGGGCTGCAATGCAGGCAGCCGAGGAGTTACACAGAAAGAAAATGGCACAGGAACGGGAAGGGGAGAAGGACGAAGAAGTAGAGGGCAAGGATGATCCCATGGCAAGGGTGGAAGCAGAGGTCTTGAACCAGAGTAACAGTTCTTAG 522 0.5057 MNQPVQKNTLYVGGLAEEVNESILHSAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAAAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENRAAMQAAEELHRKKMAQEREGEKDEEVEGKDDPMARVEAEVLNQSNSS* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1464 173 MobiDBLite consensus disorder prediction 130 162 - -
Vvi5g1464 173 Coils Coil 111 145 - -
Vvi5g1464 173 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vvi5g1464 173 FunFam Peptidyl-prolyl cis-trans isomerase 1 153 - -
Vvi5g1464 173 SUPERFAMILY RNA-binding domain, RBD 4 95 IPR035979 GO:0003676
Vvi5g1464 173 CDD RRM_PPIE 10 84 IPR034168 GO:0003723
Vvi5g1464 173 Gene3D - 1 161 IPR012677 -
Vvi5g1464 173 MobiDBLite consensus disorder prediction 128 173 - -
Vvi5g1464 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Vvi5g1464 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vvi5g1464 173 PANTHER ATPASE E1 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1464 Vvi-Chr5 22498650 22500102 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1464 8 86 Eukaryotic Initiation Factors Gene Family AT3G11400 36.709 8.05e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1464 - K09564 vvi:100261055 320.857