Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1463 ATGGAAAATGAAGAGGCCAAAACAGGAGTGGATTTTGGGGCCACGAACGATGTTGGTGGTGAGGTGGTGGGGAATTCTGTTAATATGGAGGGTGACCAGCATGGAAGTTTTGTTGAAGCGATAGCTCAACAAGGTGAGGATGATAATTTAGATCAATATTCTTCAGGAAGAGAAATAGTTCTTGGAGATGAACCTTATGTGGGTCAGGAGTTTGACTTTGAAGCTGCAGCTTACGCTTTTTATAAGGCATATGCGAAGTGGGTAGGTTTCATCATTCGTGCAAGCAGGCTTTCTAGATTGAAGGATCATAGATCTGAAACTCGCATGATGCTGGTTTGTACTAGGGAGGGTTTCAGATTGTGTGACAAGCATGAAAGTGCTCTAGAAAACAAGGAAGAGAGAAAGGCTGGTTGCAAGGCAAAACTTGTAATGAAGAAAATGATTTCTGGTAAATGGGTTGTCCAGAAATTTATCAAGAAACACAATCACACTATGGCTCCTATAAAGGGTCAAAGAGATTTGATCTATGATCAATATCTGGATGAACATGAAAAAATAAGGGAACTAACCCAGTCACTGGCCTTTGAGAAGAGACGAGCAGCAGCATATAAAAGGTATCTGACAATGGTTATTGGTTATATTGAGGAGTATAATGAGAGGATGTCGAAGACGATGAACAAAGCCACTGAGAATGTGGGAGAGATTGAAGTTAAAGAACAGGAAAATCATTAG 732 0.4057 MENEEAKTGVDFGATNDVGGEVVGNSVNMEGDQHGSFVEAIAQQGEDDNLDQYSSGREIVLGDEPYVGQEFDFEAAAYAFYKAYAKWVGFIIRASRLSRLKDHRSETRMMLVCTREGFRLCDKHESALENKEERKAGCKAKLVMKKMISGKWVVQKFIKKHNHTMAPIKGQRDLIYDQYLDEHEKIRELTQSLAFEKRRAAAYKRYLTMVIGYIEEYNERMSKTMNKATENVGEIEVKEQENH* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1463 243 Pfam FAR1 DNA-binding domain 80 166 IPR004330 -
Vvi5g1463 243 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 24 238 - -
Vvi5g1463 243 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1463 Vvi-Chr5 22490471 22495783 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi5g1463 FAR1 1.2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1463 - - vvi:100254348 455.292